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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 7
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH18265 Soybean extracellular, golgi, plasma membrane 56.03 83.33
VIT_14s0083g00180.t01 Wine grape plasma membrane 76.72 76.72
Solyc02g065580.2.1 Tomato plasma membrane 76.72 76.72
PGSC0003DMT400002997 Potato plasma membrane 76.29 76.29
AT5G38630.1 Thale cress extracellular 71.55 72.17
GSMUA_Achr1P25200_001 Banana extracellular, golgi, plasma membrane 71.55 71.55
Bra028195.1-P Field mustard extracellular, golgi, plasma membrane 70.69 71.3
CDX74514 Canola extracellular 70.69 71.3
CDY01648 Canola extracellular 69.4 70.0
EES13771 Sorghum plasma membrane 60.34 59.57
Os08t0384000-01 Rice plasma membrane 59.91 59.4
Zm00001d032327_P001 Maize plasma membrane 59.48 58.72
TraesCS7A01G292700.1 Wheat plasma membrane 59.05 58.55
TraesCS7B01G199100.1 Wheat plasma membrane 59.05 58.55
TraesCS7D01G286900.1 Wheat plasma membrane 59.05 58.55
HORVU7Hr1G065590.3 Barley plasma membrane 58.62 58.12
GSMUA_Achr4P06470_001 Banana golgi, peroxisome, plasma membrane, plastid 67.24 57.56
KRH35325 Soybean mitochondrion, nucleus 45.26 45.45
KRH75524 Soybean extracellular, golgi, plasma membrane 46.12 45.15
KRG91503 Soybean nucleus 44.4 44.59
KRH70628 Soybean plasma membrane 46.12 44.21
KRG89271 Soybean plasma membrane 36.64 38.64
KRH49716 Soybean plasma membrane 31.9 34.74
KRG89270 Soybean plasma membrane 27.59 34.22
KRH58610 Soybean plasma membrane 31.03 33.96
KRH42515 Soybean golgi, plasma membrane 28.02 29.41
Protein Annotations
Gene3D:1.20.120.1770EntrezGene:100787570MapMan:35.1UniProt:A0A0R4J5Z6EMBL:ACUP02011630InterPro:Cyt_b561/ferric_Rdtase_TM
EnsemblPlantsGene:GLYMA_19G044200GO:GO:0005575GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021
GO:GO:0055114InterPro:IPR006593EnsemblPlants:KRG93825ProteinID:KRG93825ProteinID:KRG93825.1PFAM:PF03188
PFscan:PS50939PANTHER:PTHR10106SMART:SM00665TMHMM:TMhelixUniParc:UPI000189D38ASEG:seg
Description
hypothetical protein
Coordinates
chr19:+:6521277..6525149
Molecular Weight (calculated)
25340.6 Da
IEP (calculated)
9.962
GRAVY (calculated)
0.819
Length
232 amino acids
Sequence
(BLAST)
001: MATPPVVRFP IFTAVRAVGV AVTVLLLTWA VHFRGGLALV SDNKDLIFNV HPVLMVIGLV LINGEGMLAY KTLSGTKNFK KSVHLALQFA ALILSLIGVW
101: AAWKFHIDKG IDNFYSLHSW LGLACLFLFT IQWGAGFATF WYPGGSRNSR AALLPWHVFF GIYIYCLAIA TTATGILEKA TFLQVNNIIS RYSNEALLVN
201: SLGILIVILG GFVILGIVTP VYGKADVIRG NE
Best Arabidopsis Sequence Match ( AT5G38630.1 )
(BLAST)
001: MAVPVLGGFP IFMVVRVLGF IIAALVLTWT VHYRGGLALS SDNKDHIFNV HPVMMVIGLI LFNGEAMLAY KSVQGTKNLK KLVHLTLQLT AFILSLIGVW
101: AALKFHIDKG IENFYSLHSW LGLACLFLFA FQWAAGFVTY WYPGGSRNSR ASLMPWHVFL GISIYALALV TATTGILEKV TFLQVNQVIT RYSTEAMLVN
201: TMGVLILILG GFVILGVVTP VSGKDQVLTQ
Arabidopsis Description
CYB561BProbable transmembrane ascorbate ferrireductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWS1]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.