CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35325	Soybean	mitochondrion, nucleus	95.67	95.67
VIT_16s0050g00090.t01	Wine grape	plasma membrane	69.7	70.0
PGSC0003DMT400037195	Potato	plasma membrane	68.83	68.83
Solyc03g025840.2.1	Tomato	plasma membrane	68.83	68.83
Bra019153.1-P	Field mustard	plasma membrane	67.97	66.81
CDX92719	Canola	plasma membrane	67.97	66.81
CDY50196	Canola	plasma membrane	67.97	66.81
CDY57373	Canola	plasma membrane	67.97	66.81
KXG26783	Sorghum	plasma membrane	64.07	63.25
TraesCS2A01G369700.1	Wheat	plasma membrane	64.94	63.03
TraesCS2B01G386700.1	Wheat	plasma membrane	64.94	63.03
TraesCS2D01G366100.1	Wheat	plasma membrane	64.94	63.03
TraesCS6A01G237300.1	Wheat	plasma membrane	63.64	62.82
CDX91626	Canola	plasma membrane	63.2	62.66
HORVU2Hr1G091720.2	Barley	plasma membrane	64.5	62.6
TraesCS6D01G219900.1	Wheat	plasma membrane	63.2	62.39
Os04t0533500-02	Rice	plasma membrane	63.64	62.29
Os02t0642300-01	Rice	extracellular, golgi, mitochondrion	27.71	62.14
TraesCS6B01G265800.2	Wheat	plasma membrane	63.64	62.03
GSMUA_Achr4P26140_001	Banana	plasma membrane	62.77	61.7
Bra022581.1-P	Field mustard	plasma membrane	61.9	61.37
CDY27081	Canola	plasma membrane	61.47	60.94
GSMUA_Achr1P00250_001	Banana	plasma membrane	61.9	60.85
EES05833	Sorghum	plasma membrane	62.34	60.76
TraesCS1B01G189800.1	Wheat	plasma membrane	57.14	57.39
Os10t0504200-01	Rice	plasma membrane	57.14	57.39
GSMUA_Achr1P06830_001	Banana	plasma membrane	57.58	57.33
TraesCS1A01G174900.1	Wheat	plasma membrane	46.75	57.14
TraesCS1D01G164200.1	Wheat	plasma membrane	56.28	56.52
AT4G25570.2	Thale cress	plasma membrane	67.97	56.07
Zm00001d032521_P004	Maize	plasma membrane	54.98	55.22
Zm00001d052746_P001	Maize	plasma membrane	54.98	54.98
EER91407	Sorghum	plasma membrane	54.55	54.78
Os08t0101700-01	Rice	golgi, plasma membrane, plastid	52.81	51.26
HORVU7Hr1G078690.1	Barley	endoplasmic reticulum, plasma membrane, plastid	52.38	50.63
HORVU1Hr1G046270.2	Barley	plastid	58.01	50.0
TraesCS7A01G328700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.22	48.95
TraesCS7D01G325600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	49.78	48.52
TraesCS7B01G229400.1	Wheat	golgi, plasma membrane, vacuole	49.78	48.52
CDX94439	Canola	extracellular	27.27	48.09
HORVU6Hr1G060720.1	Barley	vacuole	63.2	47.4
Zm00001d051272_P001	Maize	plastid	62.77	46.47
KRG89271	Soybean	plasma membrane	42.42	44.55
KRG93825	Soybean	endoplasmic reticulum	44.59	44.4
OQU75566	Sorghum	plasma membrane	53.68	43.66
KRG89270	Soybean	plasma membrane	32.47	40.11
KRH58610	Soybean	plasma membrane	36.8	40.09
KRH49716	Soybean	plasma membrane	36.8	39.91
KRH75524	Soybean	extracellular, golgi, plasma membrane	38.96	37.97
KRH18265	Soybean	extracellular, golgi, plasma membrane	25.54	37.82
KRH70628	Soybean	plasma membrane	39.39	37.6
Zm00001d002837_P001	Maize	plasma membrane	63.64	34.43
KRH42515	Soybean	golgi, plasma membrane	32.9	34.39

Protein Annotations

Gene3D:1.20.120.1770	MapMan:35.1	UniProt:A0A0R0EBS2	EMBL:ACUP02012689	InterPro:Cyt_b561/ferric_Rdtase_TM	EnsemblPlantsGene:GLYMA_20G158300
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0055114
InterPro:IPR006593	EnsemblPlants:KRG91503	ProteinID:KRG91503	ProteinID:KRG91503.1	PFAM:PF03188	PFscan:PS50939
PANTHER:PTHR10106	PANTHER:PTHR10106:SF22	SMART:SM00665	TMHMM:TMhelix	UniParc:UPI000189D399	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:39686466..39689588

Molecular Weight (calculated)

24931.1 Da

IEP (calculated)

6.896

GRAVY (calculated)

1.017

Length

231 amino acids

Sequence
(BLAST)

001: MALGVPALPL TYVAHVLALV ASILVVLWVL NFRGGLAWDS DNKALIFNLH PVLIVIGLLV LGGEAIISYK ALPLKKEVKK LIHLVFHAIA LILGIVGIYT
101: AFKYHNESGI ANLYSLHSWL GIGVIVLYGI QWIYGFVIFF FPGGTPDIRR ASLPWHALFG LFVFVLAVGT AALGFLEKLT FLENSGLDKY GSEALLVNFT
201: AIITVLFGAF VVLSALADAP PAPAADDYEA I

Best Arabidopsis Sequence Match ( AT4G25570.2 )
(BLAST)

001: MENLRIDSSQ RPRLKINRTK EIRRVEKTTR RKKHSCRRER DMAVRINAMA VTFVAHALAV IAAIMVLVWS ISYRGGLAWE ATNKNLIFNL HPVLMLIGFI
101: ILGGEAIISY KSLPLEKPVK KLIHLILHAI ALALGIFGIC AAFKNHNESH IPNLYSLHSW IGIGVISLYG FQWVYSFIVF FFPGGSTNLK SGLLPWHAML
201: GLFVYILAVG NAALGFLEKL TFLENGGLDK YGSEAFLINF TAIITILFGA FVVLTASAES PSPSPSVSND DSVDFSYSAI

Arabidopsis Description

ACYB-2Cytochrome b561/ferric reductase transmembrane protein family [Source:UniProtKB/TrEMBL;Acc:A0A1P8B653]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.