CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21462	Soybean	endoplasmic reticulum	94.15	94.15
KRH21460	Soybean	nucleus	85.38	85.55
KRH10854	Soybean	nucleus	85.96	84.48
Zm00001d041637_P001	Maize	cytosol	10.53	72.97
Zm00001d045132_P001	Maize	cytosol	6.24	72.73
Bra029537.1-P	Field mustard	extracellular, vacuole	65.89	67.06
CDY44735	Canola	extracellular, vacuole	65.69	66.87
AT4G04955.1	Thale cress	extracellular, golgi, vacuole	65.5	66.4
CDY16634	Canola	endoplasmic reticulum, vacuole	65.11	66.4
Solyc02g078400.2.1	Tomato	vacuole	64.52	65.81
PGSC0003DMT400057649	Potato	vacuole	64.13	65.41
TraesCS2A01G587900.1	Wheat	endoplasmic reticulum	62.38	63.37
TraesCS2D01G565300.1	Wheat	endoplasmic reticulum, extracellular	61.79	62.77
TraesCS2B01G595300.1	Wheat	endoplasmic reticulum, extracellular	61.79	62.77
EES11665	Sorghum	extracellular, vacuole	61.79	62.65
Zm00001d026635_P002	Maize	endoplasmic reticulum, extracellular, vacuole	61.79	60.27
Os04t0680400-01	Rice	endoplasmic reticulum, extracellular	35.67	57.91
GSMUA_AchrUn_...	Banana	extracellular	52.05	57.42
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	12.28	40.91
KRH73532	Soybean	endoplasmic reticulum	20.86	20.34
KRH14595	Soybean	endoplasmic reticulum	20.86	20.34
KRH10574	Soybean	endoplasmic reticulum	20.08	19.66
KRH43883	Soybean	endoplasmic reticulum	18.91	18.8

Protein Annotations

KEGG:00230+3.5.2.5	EntrezGene:100795029	Gene3D:3.20.20.140	MapMan:6.1.4.8	EMBL:ACUP02009162	InterPro:Allantoinase
InterPro:Amidohydro-rel	EnsemblPlantsGene:GLYMA_15G072900	GO:GO:0000256	GO:GO:0003674	GO:GO:0003824	GO:GO:0004038
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006145	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016810	GO:GO:0050897	UniProt:I1MEH3
InterPro:IPR011059	EnsemblPlants:KRH10853	ProteinID:KRH10853	ProteinID:KRH10853.1	InterPro:Metal-dep_hydrolase_composite	InterPro:Metal_Hydrolase
PFAM:PF01979	PANTHER:PTHR43668	PANTHER:PTHR43668:SF2	MetaCyc:PWY-5697	MetaCyc:PWY-5698	SUPFAM:SSF51338
SUPFAM:SSF51556	TIGRFAMs:TIGR03178	TMHMM:TMhelix	UniParc:UPI000233BFB2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:5586009..5592298

Molecular Weight (calculated)

56649.0 Da

IEP (calculated)

5.828

GRAVY (calculated)

-0.136

Length

513 amino acids

Sequence
(BLAST)

001: MDQLLWRVLP LLTILVSFGV FFYLQDSYTA QFYALIKLPR DKCSLLPHRH FWISSKRIVT PQGIISGSVE INDGKIISVV EGHANQGKPK QEEVIDYGDA
101: VIMPGLIDVH VHLDEPGRTE WEGFDTGTRA AAAGGVTTVV DMPLNNYPTT VSKEKLKLKL DAAEDKIYVD VGFWGGLIPE NALNTSILEG LLSAGVLGMK
201: SFMCPSGIND FPMTTIDHIK AGLPVLAKYK RPIVVHAEVQ QDFENHLELN EDNLDPRAYL TYLNARPPSW EEAAIKQLVG VTKDTRKGGP LEGAHVHIVH
301: LSDSSASLDL IKEAKSRGDS ISVETCPHYL AFSSEEIPNG DTRFKCSPPI RDAYNREKLW GAVLEGHIDL LSSDHSPTVP ELKLMEEGDF LKAWGGISSL
401: QFNLPVTWSY GKKYGLTLEQ LSLLWSKKPA TLAGLESKGA IAVGNHADIV VWQPELEFDL DDDYPVFIKH SELSAYMGRR LSGKVLETFV RGNLVFKDGK
501: HAPAPCGVQI LAK

Best Arabidopsis Sequence Match ( AT4G04955.1 )
(BLAST)

001: MERTLLQWRL LPLLALIVAL FSFFFASPRS LQGNNKCSLL PHDHYWISSK RIVTPNGLIS GSVEVKGGII VSVVKEVDWH KSQRSRVKVI DYGEAVLMPG
101: LIDVHVHLDD PGRSEWEGFP SGTKAAAAGG ITTLVDMPLN SFPSTVSPET LKLKIEAAKN RIHVDVGFWG GLVPDNALNS SALESLLDAG VLGLKSFMCP
201: SGINDFPMTN ITHIKEGLSV LAKYKRPLLV HAEIERDLEI EDGSENDPRS YLTYLKTRPT SWEEGAIRNL LSVTENTRIG GSAEGAHLHI VHLSDASSSL
301: DLIKEAKGKG DSVTVETCPH YLAFSAEEIP EGDTRFKCSP PIRDAANREK LWEALMEGDI DMLSSDHSPT KPELKLMSDG NFLKAWGGIS SLQFVLPITW
401: SYGKKYGVTL EQVTSWWSDR PSKLAGLHSK GAVTVGKHAD LVVWEPEAEF DVDEDHPIHF KHPSISAYLG RRLSGKVVST FVRGNLVFGE GKHASDACGS
501: LQLATT

Arabidopsis Description

ALNAllantoinase [Source:UniProtKB/Swiss-Prot;Acc:Q94AP0]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.