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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:vacuole
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH14595 Soybean endoplasmic reticulum 95.25 95.25
KRH10574 Soybean endoplasmic reticulum 87.45 87.79
VIT_06s0009g02790.t01 Wine grape endoplasmic reticulum, vacuole 80.04 78.54
KRH43883 Soybean endoplasmic reticulum 74.14 75.58
AT5G12200.1 Thale cress vacuole 74.33 73.63
GSMUA_Achr7P21420_001 Banana extracellular, vacuole 74.33 73.36
Solyc11g064920.1.1 Tomato vacuole 73.76 72.66
Bra008908.1-P Field mustard vacuole 74.52 72.59
CDX69698 Canola vacuole 74.33 72.27
Os01t0807900-01 Rice endoplasmic reticulum, vacuole 71.67 69.94
VIT_13s0047g00920.t01 Wine grape cytosol 13.12 69.7
TraesCS3D01G327500.2 Wheat endoplasmic reticulum, extracellular 70.15 68.84
HORVU3Hr1G079000.23 Barley endoplasmic reticulum, extracellular 70.15 68.59
TraesCS3A01G334000.2 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 69.96 68.4
TraesCS3B01G365000.2 Wheat extracellular, golgi 69.77 68.34
OQU87726 Sorghum vacuole 69.58 68.28
Zm00001d043152_P001 Maize extracellular 69.01 67.47
CDX97175 Canola vacuole 74.52 57.99
Zm00001d012711_P001 Maize cytosol 9.89 50.98
KRH10853 Soybean endoplasmic reticulum 20.34 20.86
KRH21460 Soybean nucleus 19.96 20.51
KRH21462 Soybean endoplasmic reticulum 19.77 20.27
KRH10854 Soybean nucleus 19.58 19.73
Protein Annotations
EntrezGene:100802353Gene3D:2.30.40.10Gene3D:3.20.20.140MapMan:6.2.4.4EMBL:ACUP02001280InterPro:Amidohydro-rel
EnsemblPlantsGene:GLYMA_02G278600GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0016787GO:GO:0016810InterPro:Hydantoinase/dihydroPyraseUniProt:I1JIW1InterPro:IPR011059
EnsemblPlants:KRH73532ProteinID:KRH73532ProteinID:KRH73532.1InterPro:Metal-dep_hydrolase_compositeInterPro:Metal_HydrolasePFAM:PF01979
PANTHER:PTHR11647PANTHER:PTHR11647:SF1SUPFAM:SSF51338SUPFAM:SSF51556SignalP:SignalP-noTMTIGRFAMs:TIGR02033
UniParc:UPI000233714A:::::
Description
hypothetical protein
Coordinates
chr2:-:46109001..46113962
Molecular Weight (calculated)
57802.6 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.105
Length
526 amino acids
Sequence
(BLAST)
001: MQFNITSQFL HIFSLTFFLI ITSSLSQSNQ FCDAGTEIPS SKLLIKGGTV VNGHHQQMAD VYVEDGIIVA VNPNFRVGDD VTVIDATGKY VLPGGIDPHT
101: HLDMDVGFTA TVDDFFSGQA AALAGGTTMH IDFVIPLNGS LTAGFDDYEK KAKKSCMDYG FHMAITKWDE TVSREMELMV KEKGINSFKF FMAYKGILMI
201: NDELLLKGFK KCKSLGAVAM VHAENGDAVY EGQQKMIELG ITGPEGHALS RPAVLEGEAT ARAIRLADFV NTPLYVVHVM SIDAMEEIAK ARKSGQRVIG
301: EPIASGLALD ESWLWHPDFD IAAKYVMSPP IRKRGHDKAL QAALSTGVLQ LVGTDHCAFN STQKARGIDD FRKMPNGVNG IEERMHLVWD IMVESGQISV
401: TDYVRITSTE CAKIFNIYPR KGAILPGSDA DIIILNPNSS FEMSAKSHHS RLDTNVYEGR RGKGKIEVTI VGGRVVWENN ELKVTPGTGR YIQMPPYSYL
501: FDGLDKKDAI YLNSLQAPVK RAKAST
Best Arabidopsis Sequence Match ( AT5G12200.1 )
(BLAST)
001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T
Arabidopsis Description
PYD2Dihydropyrimidinase [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP3]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.