CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10574	Soybean	endoplasmic reticulum	83.33	82.06
KRH14595	Soybean	endoplasmic reticulum	75.97	74.52
KRH73532	Soybean	endoplasmic reticulum	75.58	74.14
VIT_06s0009g02790.t01	Wine grape	endoplasmic reticulum, vacuole	73.45	70.71
Solyc11g064920.1.1	Tomato	vacuole	68.41	66.1
GSMUA_Achr7P21420_001	Banana	extracellular, vacuole	67.83	65.67
AT5G12200.1	Thale cress	vacuole	67.44	65.54
CDX69698	Canola	vacuole	67.05	63.96
Bra008908.1-P	Field mustard	vacuole	66.67	63.7
VIT_13s0047g00920.t01	Wine grape	cytosol	12.21	63.64
Os01t0807900-01	Rice	endoplasmic reticulum, vacuole	63.37	60.67
TraesCS3D01G327500.2	Wheat	endoplasmic reticulum, extracellular	62.4	60.07
HORVU3Hr1G079000.23	Barley	endoplasmic reticulum, extracellular	62.4	59.85
OQU87726	Sorghum	vacuole	61.82	59.51
TraesCS3A01G334000.2	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.02	59.48
TraesCS3B01G365000.2	Wheat	extracellular, golgi	61.82	59.4
Zm00001d043152_P001	Maize	extracellular	61.82	59.29
Zm00001d012711_P001	Maize	cytosol	10.27	51.96
CDX97175	Canola	vacuole	67.05	51.18
KRH10853	Soybean	endoplasmic reticulum	18.8	18.91
KRH21462	Soybean	endoplasmic reticulum	18.6	18.71
KRH21460	Soybean	nucleus	18.41	18.55
KRH10854	Soybean	nucleus	18.02	17.82

Protein Annotations

Gene3D:2.30.40.10	Gene3D:3.20.20.140	MapMan:6.2.4.4	UniProt:A0A0R0IV26	EMBL:ACUP02004902	InterPro:Amidohydro-rel
EnsemblPlantsGene:GLYMA_08G177500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0016787	GO:GO:0016810	InterPro:Hydantoinase/dihydroPyrase	InterPro:IPR011059	EnsemblPlants:KRH43883
ProteinID:KRH43883	ProteinID:KRH43883.1	InterPro:Metal-dep_hydrolase_composite	InterPro:Metal_Hydrolase	PFAM:PF01979	PANTHER:PTHR11647
PANTHER:PTHR11647:SF1	SUPFAM:SSF51338	SUPFAM:SSF51556	SignalP:SignalP-noTM	TIGRFAMs:TIGR02033	UniParc:UPI0006EDF90D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:14219393..14224106

Molecular Weight (calculated)

56547.2 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.089

Length

516 amino acids

Sequence
(BLAST)

001: MAMGLMSQLL LLASSLSRSN QFCDAGTSSK LLIKGGTVVN AHHQQVADVY VEDGIIVSIK STIMVGDEVT VIDATGKFVM PGGTDPHTHL EFEFMGTETV
101: DGFFGGQAAA LAGGTTMHID FVIPRKGSLT AGIEAYEKKA RKSCMDYGFH IAITKWDETM SREMELMVKE KGTNSFKFFM AYKGALMIND EFLLEGFKKC
201: KSLGALAMVH AENGDAVDEG QKKNYRTWNN WYVIILNTCY DFLCCVILLE GEATARAIHL ADFVNTPLYV VHVMSIDAME EIAKARKSGQ RVIGEPVASG
301: LALDESWLWH PDFETAAKQV MSPPIRKRGH DKALQASLST GLVGTDRCAF NSTQKALGID DFQKIPNGVN GIEERMHLVW DIMVESVQIS VTDYVRLTST
401: NGCQNARIFN ICPRKGAILP GSDADIIILN PNSSFEITAK SHHSKLDTNG KVEVTIAGGR VVWENNELKV AHGTGRYIKM PPFSYLSDGI DKKGCLLSKL
501: PPSPSGESQI QHLKSF

Best Arabidopsis Sequence Match ( AT5G12200.1 )
(BLAST)

001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T

Arabidopsis Description

PYD2Dihydropyrimidinase [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.