Factsheet for Bra008908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69698	Canola	vacuole	94.44	94.27
AT5G12200.1	Thale cress	vacuole	89.44	90.96
VIT_06s0009g02790.t01	Wine grape	endoplasmic reticulum, vacuole	77.96	78.54
KRH10574	Soybean	endoplasmic reticulum	74.63	76.91
Solyc11g064920.1.1	Tomato	vacuole	75.56	76.4
KRH14595	Soybean	endoplasmic reticulum	72.96	74.9
KRH73532	Soybean	endoplasmic reticulum	72.59	74.52
GSMUA_Achr7P21420_001	Banana	extracellular, vacuole	72.78	73.73
Os01t0807900-01	Rice	endoplasmic reticulum, vacuole	73.52	73.65
TraesCS3D01G327500.2	Wheat	endoplasmic reticulum, extracellular	72.04	72.57
OQU87726	Sorghum	vacuole	72.04	72.57
TraesCS3B01G365000.2	Wheat	extracellular, golgi	71.85	72.25
Zm00001d043152_P001	Maize	extracellular	71.85	72.12
TraesCS3A01G334000.2	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.85	72.12
HORVU3Hr1G079000.23	Barley	endoplasmic reticulum, extracellular	71.3	71.56
KRH43883	Soybean	endoplasmic reticulum	63.7	66.67
VIT_13s0047g00920.t01	Wine grape	cytosol	11.67	63.64
Zm00001d012711_P001	Maize	cytosol	10.37	54.9
Bra029537.1-P	Field mustard	extracellular, vacuole	19.07	20.44

Protein Annotations

Gene3D:2.30.40.10	Gene3D:3.20.20.140	MapMan:6.2.4.4	InterPro:Amidohydro-rel	EnsemblPlantsGene:Bra008908	EnsemblPlants:Bra008908.1
EnsemblPlants:Bra008908.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004157	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006139	GO:GO:0006212
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009987
GO:GO:0009991	GO:GO:0012505	GO:GO:0016787	GO:GO:0016810	GO:GO:0043562	InterPro:Hydantoinase/dihydroPyrase
InterPro:IPR011059	UniProt:M4CXG1	InterPro:Metal-dep_hydrolase_composite	InterPro:Metal_Hydrolase	PFAM:PF01979	PANTHER:PTHR11647
PANTHER:PTHR11647:SF1	SUPFAM:SSF51338	SUPFAM:SSF51556	SignalP:SignalP-noTM	TIGRFAMs:TIGR02033	UniParc:UPI0002543F02
SEG:seg	:	:	:	:	:

Description

AT5G12200 (E=9e-268) | dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2)

Coordinates

chrA10:+:14370466..14373542

Molecular Weight (calculated)

58564.2 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.054

Length

540 amino acids

Sequence
(BLAST)

001: MALRPIYDAI FFILSLLLLL PSPSVSDSAT QFCSAERGPG GESCGVPSSS SSTRILIKGG TVVNAHHQQL ADVYVEDGII VAVQPNIKVG DEVTVLDATG
101: KFVMPGGIDP HTHLAMEFMD TETIDDFFSG QAAALAGGTT MHIDFVIPVN GNLVAGFESY ENKSRNSCMD YGFHMAITKW DDGVSKDMEI MVKEKGINSF
201: KFFLAYKGSL MVTDDLLLEG LKRCKSLGAL AMVHAENGDA VLEGQKRMIE LGITGPEGHA LSRPPVLEGE ATSRAIRLAR FVNTPLYVVH VMSVDAMDEI
301: AKARKAGQKV IGEPVVSGLI LDDHWLWDPD FTIASKYVMS PPIRSVGHGK ALQEALSTGI LQLVGTDHCT FNSTQKALGL DDFRKIPNGV NGLEERMHLT
401: WDTMVGSGQI SATDFVRITS TECAKIFNIY PRKGAILPGS DADIIILNPN SSYVISSKSH HSRSDTNVYE GRRGQGKVEV TIAGGRIVWE NDELKVVPGS
501: GKYVEMPPFS YLFDGIEKSD ANYLSSLRAP VKRVRSEATT

Best Arabidopsis Sequence Match ( AT5G12200.1 )
(BLAST)

001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T

Arabidopsis Description

PYD2Dihydropyrimidinase [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.