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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • cytosol 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:vacuole
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH14595 Soybean endoplasmic reticulum 88.36 88.02
KRH73532 Soybean endoplasmic reticulum 87.79 87.45
KRH43883 Soybean endoplasmic reticulum 82.06 83.33
VIT_06s0009g02790.t01 Wine grape endoplasmic reticulum, vacuole 83.59 81.72
Solyc11g064920.1.1 Tomato vacuole 77.86 76.4
AT5G12200.1 Thale cress vacuole 77.1 76.08
GSMUA_Achr7P21420_001 Banana extracellular, vacuole 76.72 75.42
Bra008908.1-P Field mustard vacuole 76.91 74.63
CDX69698 Canola vacuole 76.72 74.31
Os01t0807900-01 Rice endoplasmic reticulum, vacuole 72.52 70.5
TraesCS3D01G327500.2 Wheat endoplasmic reticulum, extracellular 71.37 69.78
VIT_13s0047g00920.t01 Wine grape cytosol 13.17 69.7
HORVU3Hr1G079000.23 Barley endoplasmic reticulum, extracellular 71.37 69.52
TraesCS3A01G334000.2 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.99 69.14
TraesCS3B01G365000.2 Wheat extracellular, golgi 70.8 69.09
OQU87726 Sorghum vacuole 70.23 68.66
Zm00001d043152_P001 Maize extracellular 70.23 68.4
CDX97175 Canola vacuole 76.91 59.62
Zm00001d012711_P001 Maize cytosol 10.5 53.92
KRH21460 Soybean nucleus 19.85 20.31
KRH10853 Soybean endoplasmic reticulum 19.66 20.08
KRH21462 Soybean endoplasmic reticulum 19.27 19.69
KRH10854 Soybean nucleus 19.47 19.54
Protein Annotations
EntrezGene:100797867Gene3D:2.30.40.10Gene3D:3.20.20.140MapMan:6.2.4.4EMBL:ACUP02009148InterPro:Amidohydro-rel
EnsemblPlantsGene:GLYMA_15G055500GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0016787GO:GO:0016810InterPro:Hydantoinase/dihydroPyraseUniProt:I1MDY5InterPro:IPR011059
EnsemblPlants:KRH10574ProteinID:KRH10574ProteinID:KRH10574.1InterPro:Metal-dep_hydrolase_compositeInterPro:Metal_HydrolasePFAM:PF01979
PANTHER:PTHR11647PANTHER:PTHR11647:SF1SUPFAM:SSF51338SUPFAM:SSF51556SignalP:SignalP-noTMTIGRFAMs:TIGR02033
UniParc:UPI000233B2C9SEG:seg::::
Description
hypothetical protein
Coordinates
chr15:+:4342571..4348791
Molecular Weight (calculated)
57244.0 Da
IEP (calculated)
6.205
GRAVY (calculated)
-0.060
Length
524 amino acids
Sequence
(BLAST)
001: MAMGLTSQLL LSLFISTLLL LLPSSLSQSN QFCDAGTSSK LLIKGGTVVN AHHQQVADVY VEDGIIVAIN PTITVGDEVT VIDATGKFVM PGGIDPHTHL
101: EFEFMDTETV DDFFSGQAAA LAGGTTMHID FVIPHKGSLT AGFEAYEKKA KKSCMDYGFH MAITKWDETV SREMELMVKE KGINSFKFFM AYKGALMIND
201: ELLLEGFKKC KSLGALAMVH AENGDAVYEG QEKMIELGIT GPEGHALSRP AVLEGEATAR AIRLADFVNT PLYVVHVMSI DAMEEIAKAR KSGQRVIGEP
301: VASGLALDES WLWHPDFETA AKYVMSPPIR KRGHDKALQA ALSTGVLQLV GTDHCAFNST QKALGIDDFR KIPNGVNGIE ERMHLVWDIM VESGQISVTD
401: YVRLTSTECA RIFNIYPRKG AILPGSDADI IILNPNSTFE ITAKSHHSKL DTNVYEGRSG KGKIEVTIAG GRVVWENNEL KVAPGTGRYI KMPPFSYLFN
501: GIDKKDAFYL NSLQAPVKRA KSNT
Best Arabidopsis Sequence Match ( AT5G12200.1 )
(BLAST)
001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T
Arabidopsis Description
PYD2Dihydropyrimidinase [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP3]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.