Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G050200.1 Wheat cytosol 68.21 68.02
TraesCS5D01G056000.1 Wheat cytosol 68.21 68.02
TraesCS5A01G046100.2 Wheat cytosol 67.93 67.75
HORVU5Hr1G011170.1 Barley cytosol 67.66 67.48
Os12t0612100-01 Rice cytosol 67.12 67.12
GSMUA_Achr4P31690_001 Banana extracellular, vacuole 43.75 43.51
VIT_10s0003g05000.t01 Wine grape cytosol 37.5 36.8
EES16792 Sorghum cytosol 29.89 25.29
KXG33927 Sorghum plastid 22.01 20.82
Protein Annotations
EnsemblPlants:KXG23983EnsemblPlantsGene:SORBI_3008G167600GO:GO:0003674GO:GO:0003824GO:GO:0016740GO:GO:0080048
InterPro:GDPGPPANTHER:PTHR20884PANTHER:PTHR20884:SF9ProteinID:KXG23983ProteinID:KXG23983.1UniParc:UPI00022072B3
UniProt:A0A1B6PE71MapMan:35.1::::
Description
hypothetical protein
Coordinates
chr8:-:60161579..60164342
Molecular Weight (calculated)
40798.4 Da
IEP (calculated)
4.863
GRAVY (calculated)
-0.040
Length
368 amino acids
Sequence
(BLAST)
001: MVSATKVEGE YSFLSKNSHL DQSEGVKIHL YQFGAEHRNE KLKSFACSVQ DGPSLLDMLL LSQWDNFAWK GHLDYDVTAC QLKVIGGGRN FVGQLNNKWN
101: PFSLKEYDKF FESFECLKPN SMKSYDGLLL GIAQGENDRP EVAPSASPPK DGLLVIANTY PVEYGHIFLV PSAIHQLSCY WDKRMIGLAT KISSEVNNES
201: FKVFFDSGTS VVSGHMIFQA CYFAIPLPVE SASTFTVYDG KAGSDIIVSE TVDYPLKALV FTSTNLKTLV SVLSEISFSL HDNATAYSLL ISNNGTKVFL
301: FPQVKNLVTG CCLSAWECGG YFVYQTKFDF DNASETEISN RMGSVSLEDS TFEDLKHLCC AIADNLLM
Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.