CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042478_P003	Maize	plastid	88.95	88.72
TraesCS3D01G388200.1	Wheat	cytosol	69.92	79.3
HORVU6Hr1G054830.1	Barley	cytosol	20.31	75.24
HORVU5Hr1G075160.1	Barley	plastid	56.3	70.42
TraesCS3B01G426400.3	Wheat	plastid	71.47	70.03
TraesCS3A01G394400.1	Wheat	plastid	70.69	69.27
HORVU3Hr1G089030.13	Barley	plastid	70.69	66.43
HORVU6Hr1G083130.2	Barley	extracellular	39.59	64.44
Os01t0901300-01	Rice	cytosol	23.65	62.59
HORVU5Hr1G100430.1	Barley	mitochondrion	41.13	60.61
EES16792	Sorghum	cytosol	47.81	42.76
GSMUA_Achr6P13510_001	Banana	cytosol, endoplasmic reticulum, plastid	49.36	39.1
KXG23983	Sorghum	cytosol	20.82	22.01

Protein Annotations

EnsemblPlants:KXG33927	EnsemblPlantsGene:SORBI_3003G391500	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0080048
InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:KXG33927	ProteinID:KXG33927.1	SignalP:SignalP-noTM
UniParc:UPI00081AEA18	UniProt:A0A1B6Q7Q1	MapMan:10.3.1.5	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:70268605..70271675

Molecular Weight (calculated)

44217.8 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.179

Length

389 amino acids

Sequence
(BLAST)

001: MSVTALLAQL IPSLVAPAPT ASRALRNRTS QRRFFAETKL TMDDTSFDLT EHEGSNLSPF LHRLFNEWDD RKTRGLFHHD ISSCETKVLP GEHNFVATLI
101: EGRDQKKRPT EFTMNQVLQP FVSEKFNFTK VSPLEVIFRF NETEKDSAQY FDGVPDTVSA SSSAILINVS PIGYCHALLT PKIQDCLPQR IDQESFLIAM
201: YVAREARNPF FRVGYNSLGG FATINHLHFQ AYYLRVQYPV EKATTEKLTS LGNGVSIFHL LDYPVSGFLF KGGASLEDLS DVVSKVCIFL QENNRPFNVL
301: ISESGKRVFL LPQCYAEKQI LGKASQEFLD MRINPAIWEL SGHLVLKRRK DYDEASEANI CRFLVEAALS ETEFQELNRC LLDFVTSWL

Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)

001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N

Arabidopsis Description

VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.