Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G054830.1 | Barley | cytosol | 26.82 | 87.62 |
| TraesCS3A01G394400.1 | Wheat | plastid | 93.29 | 80.6 |
| TraesCS3B01G426400.3 | Wheat | plastid | 92.13 | 79.6 |
| HORVU5Hr1G075160.1 | Barley | plastid | 70.26 | 77.49 |
| HORVU3Hr1G089030.13 | Barley | plastid | 93.0 | 77.05 |
| HORVU6Hr1G083130.2 | Barley | extracellular | 49.27 | 70.71 |
| KXG33927 | Sorghum | plastid | 79.3 | 69.92 |
| Zm00001d042478_P003 | Maize | plastid | 79.3 | 69.74 |
| HORVU5Hr1G100430.1 | Barley | mitochondrion | 51.9 | 67.42 |
| Os01t0901300-01 | Rice | cytosol | 26.82 | 62.59 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 58.02 | 46.17 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 56.56 | 45.12 |
| GSMUA_Achr6P13510_001 | Banana | cytosol, endoplasmic reticulum, plastid | 59.48 | 41.55 |
| TraesCS5D01G056000.1 | Wheat | cytosol | 24.2 | 22.49 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G388200.1 | EnsemblPlantsGene:TraesCS3D01G388200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0080048 |
| InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | MapMan:10.3.1.5 | : | : |
Description
No Description!
Coordinates
chr3D:-:503736027..503737481
Molecular Weight (calculated)
38912.5 Da
IEP (calculated)
6.013
GRAVY (calculated)
-0.209
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEPNLSP FLHKLFKEWD DRKARGLFHH DITTCEAKVL PGEHNFVAIL IEGRDQKKRP TEFGMNQVLQ PFHSEKFNFT KVKPEEVIFR FQETESDSAQ
101: YFDGAPPTVS ASPSSILINV SPIGYCHVLL IPRVQECLPQ RVDRESFLLA MYVAREARNP FFRVGYNSLG AFATINHLHF QAYYLKVQYP VEKAPTEKLT
201: VIGNGVSISQ LVQYPVSGFV FEGGSSLEDL SHVVSNACIF LQESNRPYNV LISESGKRVF LLLQCYAEKQ TSGKASQEFL DMRINPAVWE LGGHLVLKRR
301: KDYDEASEAT LCRFLVEASL SEAEFQELKC CVLEFLASAS PEK
101: YFDGAPPTVS ASPSSILINV SPIGYCHVLL IPRVQECLPQ RVDRESFLLA MYVAREARNP FFRVGYNSLG AFATINHLHF QAYYLKVQYP VEKAPTEKLT
201: VIGNGVSISQ LVQYPVSGFV FEGGSSLEDL SHVVSNACIF LQESNRPYNV LISESGKRVF LLLQCYAEKQ TSGKASQEFL DMRINPAVWE LGGHLVLKRR
301: KDYDEASEAT LCRFLVEASL SEAEFQELKC CVLEFLASAS PEK
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.