Factsheet for TraesCS3A01G394400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G388200.1	Wheat	cytosol	80.6	93.29
TraesCS3B01G426400.3	Wheat	plastid	92.95	92.95
HORVU3Hr1G089030.13	Barley	plastid	90.43	86.72
HORVU6Hr1G054830.1	Barley	cytosol	22.92	86.67
HORVU5Hr1G075160.1	Barley	plastid	60.45	77.17
HORVU6Hr1G083130.2	Barley	extracellular	42.57	70.71
KXG33927	Sorghum	plastid	69.27	70.69
Zm00001d042478_P003	Maize	plastid	68.77	70.0
HORVU5Hr1G100430.1	Barley	mitochondrion	45.09	67.8
Os01t0901300-01	Rice	cytosol	24.69	66.67
TraesCS4A01G201200.1	Wheat	cytosol	50.63	46.64
TraesCS5A01G107800.2	Wheat	cytosol	48.61	44.88
GSMUA_Achr6P13510_001	Banana	cytosol, endoplasmic reticulum, plastid	50.88	41.14
TraesCS5A01G046100.2	Wheat	cytosol	21.66	23.31

Protein Annotations

EnsemblPlants:TraesCS3A01G394400.1	EnsemblPlantsGene:TraesCS3A01G394400	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0080048
InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	SEG:seg	MapMan:10.3.1.5	:

Description

No Description!

Coordinates

chr3A:-:642032206..642034305

Molecular Weight (calculated)

44575.4 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.182

Length

397 amino acids

Sequence
(BLAST)

001: MPVISPLPFS LLPAPAAPAA SRARWNSFPH HRLLRVETKA GMCSNGFDST NCLRMEEVEP NLSPFLHKLF KEWDDCKARG LFHHNITTCE TKVLPGEHNF
101: VATLIEGRDQ KKRPTEFGMN QVLQPFHSDK FNFTKVKPEE VIFRFQETEN DSAQYFDGAP PTVSASPSSI LINVSPIGYC HVLLIPQIQE CLPQRVDRES
201: FLLAMYVARE AKNPFFRVGY NSLGAFATIN HLHFQAYYLK VQYPVEKAPT EKLTVVGNGV SISQLVRYPV SGFAFEGGAS LEDLSQVVSD ACIFLQENNR
301: PFNVLISESG KRLFLLLQCY AEKQASGKAS QEFLDMRINP AVWELSGHLV LKRRKDYDEA SAATLCGFLV EASLSEAEFQ ELKKCVLEFL ASASPEK

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.