Factsheet for GSMUA_Achr6P13510_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G388200.1	Wheat	cytosol	41.55	59.48
HORVU6Hr1G054830.1	Barley	cytosol	11.81	55.24
HORVU5Hr1G075160.1	Barley	plastid	33.4	52.73
TraesCS3B01G426400.3	Wheat	plastid	42.16	52.14
TraesCS3A01G394400.1	Wheat	plastid	41.14	50.88
GSMUA_Achr6P12830_001	Banana	cytosol	44.2	49.89
GSMUA_Achr10P...	Banana	cytosol	43.79	49.54
Zm00001d042478_P003	Maize	plastid	39.31	49.49
KXG33927	Sorghum	plastid	39.1	49.36
HORVU3Hr1G089030.13	Barley	plastid	41.34	49.03
GSMUA_Achr6P07340_001	Banana	cytosol	41.96	48.13
HORVU6Hr1G083130.2	Barley	extracellular	21.79	44.77
Os01t0901300-01	Rice	cytosol	13.03	43.54
HORVU5Hr1G100430.1	Barley	mitochondrion	23.22	43.18
GSMUA_Achr6P17590_001	Banana	cytosol	16.9	39.52
GSMUA_Achr4P31690_001	Banana	extracellular, vacuole	18.53	24.59

Protein Annotations

EnsemblPlants:GSMUA_Achr6P13510_001	EnsemblPlants:GSMUA_Achr6T13510_001	EnsemblPlantsGene:GSMUA_Achr6G13510_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	ncoils:Coil	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	PFAM:PF16269
SEG:seg	UniParc:UPI0002952348	UniProt:M0T6P9	MapMan:10.3.1.5	:	:

Description

Putative UPF0580 protein C15orf58 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13510_001]

Coordinates

chr6:-:8980550..8987582

Molecular Weight (calculated)

56215.0 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.215

Length

491 amino acids

Sequence
(BLAST)

001: MTTVSDMHSR SQVQNILAEG VQDVGTFGWD LWEASFLTLL LLISCILEAH LNNVFSSATR TWAWPHQDNV YCIIHIEPYR HLDGEVGVRV SAMSVYQPTQ
101: GQHGEEKSGR SCLLQVHWIG IRLPLYYFSK AEKDSGCSLE KIEAQSTFLD RLLKEWEDRK VRGLFHHDVN AYETKILSGD YGFILQLIEG RDLKKRPTEF
201: RIDRVLQPFD GKKFNFTKIA QEEMLIRFEE SENDDRGFFE NTPIADSESP NVVAINVSPI DYGHVLLIPR ILDCLPQRLD EQSFSLAVYV AREAETPHFR
301: VAYNSLGAFA TINHLHFQAF YLVGAFPVEK APTQRIMTLA SGVEIFQLSH YPVRGLVFGG GSNLEDLSIA VSIACIFLQD NDIPYNVIIS DAGKRIFLLL
401: QCYAEKRTRG EVNQEFLEMQ INPAAWELGG YMVVKRRKDY QETSEDTLWR FLDEVASVSA EQFKEIKECI LSTLSDKIVE RNMGREDYHK C

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.