Factsheet for GSMUA_Achr6P12830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P06380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	GSMUA_Achr5P06380_001	AT2G02710.1	17982713
AT4G26850.1	GSMUA_Achr5P06380_001	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	79.08	79.26
CDY06609	Canola	cytosol	14.02	78.21
TraesCS4A01G201200.1	Wheat	cytosol	73.33	74.01
TraesCS4D01G102200.1	Wheat	cytosol	73.1	73.78
HORVU4Hr1G017030.1	Barley	cytosol	72.87	73.55
TraesCS4B01G105300.2	Wheat	cytosol	72.41	73.09
GSMUA_Achr6P07340_001	Banana	cytosol	69.89	71.03
Os12t0190000-01	Rice	cytosol	70.8	70.32
EES16792	Sorghum	cytosol	69.89	69.89
TraesCS5A01G107800.2	Wheat	cytosol	68.28	69.07
TraesCS5D01G122900.1	Wheat	cytosol	68.28	69.07
TraesCS5B01G111700.2	Wheat	cytosol	68.28	69.07
HORVU5Hr1G031870.1	Barley	cytosol	67.82	68.29
VIT_14s0006g01370.t01	Wine grape	cytosol	67.13	67.44
KRH46222	Soybean	cytosol	61.84	67.25
KRH14364	Soybean	cytosol	66.44	66.28
KRG98713	Soybean	cytosol	65.98	65.98
CDX97369	Canola	cytosol	65.52	65.97
Zm00001d035337_P001	Maize	cytosol	69.89	65.52
PGSC0003DMT400078783	Potato	cytosol	65.75	65.3
Bra019082.1-P	Field mustard	cytosol	59.08	65.06
AT5G55120.1	Thale cress	cytosol	64.37	64.97
CDY46677	Canola	cytosol	59.31	64.82
Solyc06g073320.2.1	Tomato	cytosol	65.06	64.76
CDX92792	Canola	cytosol	59.31	64.66
Solyc02g091510.2.1	Tomato	nucleus	65.06	64.61
PGSC0003DMT400069484	Potato	cytosol	64.83	64.38
CDY29254	Canola	cytosol	63.91	64.2
Bra026398.1-P	Field mustard	cytosol	63.91	64.06
CDX89298	Canola	cytosol	63.91	64.06
KRH73776	Soybean	cytosol	64.37	63.78
Bra010424.1-P	Field mustard	cytosol	64.6	63.72
VIT_19s0090g01000.t01	Wine grape	cytosol	66.21	63.72
CDY14296	Canola	cytosol	64.37	63.49
AT4G26850.1	Thale cress	cytosol	64.14	63.12
CDY06608	Canola	cytosol	25.06	59.24
GSMUA_Achr6P17590_001	Banana	cytosol	27.59	57.14
Bra035554.1-P	Field mustard	extracellular	60.92	44.76
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	58.85	44.37
GSMUA_Achr6P13510_001	Banana	cytosol, endoplasmic reticulum, plastid	49.89	44.2
GSMUA_Achr4P31690_001	Banana	extracellular, vacuole	25.29	29.73

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12830_001	EnsemblPlants:GSMUA_Achr6T12830_001	EnsemblPlantsGene:GSMUA_Achr6G12830_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	SEG:seg	UniParc:UPI000296DC87
UniProt:M0T6I1	MapMan:10.3.1.5	:	:	:	:

Description

Putative UPF0580 protein C15orf58 [Source:GMGC_GENE;Acc:GSMUA_Achr6G12830_001]

Coordinates

chr6:+:8580844..8584972

Molecular Weight (calculated)

48717.0 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.311

Length

435 amino acids

Sequence
(BLAST)

001: MLSIKRVPTV LSNYQEENAG EPLGCGRSCL GKCCLPASKL PVYAFKNDPR PKASSVGTDE LPPDFFLNTL LLGQWEDRMN RGLFRYDVTA CETKVIPGDH
101: GFIAQLNEGR HLKKRPTEFR VDRVLQAFDP AKFNFTKVGQ EEVLFRFEAA GGDEAHLFES DGNEGTKSPS VVAINVSPIE YGHVLLIPRV LDSLPQRIDQ
201: ESFLLALRMA SEAGSPYFRL GYNSLGAFAT INHLHFQAYY LSVPFPVEKA PTAKIPTNQG RSKSGVTVSR LLNYPVRGLV YEGGKHLKDL ADMVANSCIW
301: LQSNNIPFNV LISDSGRRVF LFPQCYAEKQ ALGEVGQELL DTQVNPAVWE ISGHMVLKRK KDYEEASEDY AWRLLAEVSL SEERFHEVKT YIFEAIGLVE
401: PEEEMIHEEE EKGTPSNSSD PMHAPQFPEG CLILQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.