CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07406
KRH58039
KRH69365
KRH74769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	KRH07406	AT2G02710.1	17982713
AT4G26850.1	KRH58039	AT2G02710.1	17982713
AT4G26850.1	KRH69365	AT2G02710.1	17982713
AT4G26850.1	KRH74769	AT2G02710.1	17982713
AT4G26850.1	KRH07406	AT2G02710.1	21798944
AT4G26850.1	KRH58039	AT2G02710.1	21798944
AT4G26850.1	KRH69365	AT2G02710.1	21798944
AT4G26850.1	KRH74769	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98713	Soybean	cytosol	90.25	82.99
CDY06609	Canola	cytosol	16.0	82.05
KRH14364	Soybean	cytosol	79.0	72.48
KRH73776	Soybean	cytosol	78.75	71.75
CDX92792	Canola	cytosol	68.5	68.67
Bra019082.1-P	Field mustard	cytosol	67.5	68.35
CDY46677	Canola	cytosol	68.0	68.34
CDX97369	Canola	cytosol	73.75	68.29
Bra026398.1-P	Field mustard	cytosol	73.75	67.97
CDX89298	Canola	cytosol	73.75	67.97
CDY29254	Canola	cytosol	73.0	67.44
PGSC0003DMT400069484	Potato	cytosol	73.75	67.35
VIT_19s0090g01000.t01	Wine grape	cytosol	75.75	67.04
AT4G26850.1	Thale cress	cytosol	74.0	66.97
AT5G55120.1	Thale cress	cytosol	71.75	66.59
Solyc06g073320.2.1	Tomato	cytosol	72.5	66.36
CDY14296	Canola	cytosol	72.75	65.99
Bra010424.1-P	Field mustard	cytosol	72.25	65.53
TraesCS5A01G107800.2	Wheat	cytosol	68.0	63.26
Os12t0190000-01	Rice	cytosol	69.25	63.24
GSMUA_Achr10P...	Banana	cytosol	68.5	63.13
TraesCS5B01G111700.2	Wheat	cytosol	67.75	63.02
TraesCS5D01G122900.1	Wheat	cytosol	67.75	63.02
HORVU5Hr1G031870.1	Barley	cytosol	68.0	62.96
TraesCS4A01G201200.1	Wheat	cytosol	66.75	61.95
HORVU4Hr1G017030.1	Barley	cytosol	66.75	61.95
GSMUA_Achr6P12830_001	Banana	cytosol	67.25	61.84
TraesCS4B01G105300.2	Wheat	cytosol	66.5	61.72
TraesCS4D01G102200.1	Wheat	cytosol	66.5	61.72
EES16792	Sorghum	cytosol	67.0	61.61
Zm00001d035337_P001	Maize	cytosol	66.75	57.54
GSMUA_Achr6P07340_001	Banana	cytosol	60.5	56.54
CDY06608	Canola	cytosol	25.25	54.89
GSMUA_Achr6P17590_001	Banana	cytosol	25.75	49.05
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	67.25	46.62
Bra035554.1-P	Field mustard	extracellular	68.0	45.95

Protein Annotations

MapMan:10.3.1.5	UniProt:A0A0R0IVF0	EMBL:ACUP02005329	InterPro:GDPGP	EnsemblPlantsGene:GLYMA_08G319500	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0080048	EnsemblPlants:KRH46222
ProteinID:KRH46222	ProteinID:KRH46222.1	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	UniParc:UPI0006EDE494	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:43861182..43864741

Molecular Weight (calculated)

44654.8 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.126

Length

400 amino acids

Sequence
(BLAST)

001: MLSIKRVPTV VSNYQKEETG EAAAAGGCGR NCLKSCCIQD ARLPLYAFKR GEKVGGKELP LLGCKKHPVD FLDSLVLGEW EDRMQRGLFR YDVTTCETKV
101: IPGKYGFIAQ LNEGRHLKKR PTEFRVDKVL QPFDENKFNF TKVGQEEVLF QLEASNDGEA QFFPNVPIDV ENSPSFVAIN VSPIEYGHVL LIPQIFECLP
201: QRIDHASFLL ALQMAAEARN PYFRLGYNSL GAFATINHLH FQAYYLALPF PIEKAPTKKI AKLSGGVKIS KLLNYPVRGL VFEGGHSLEG LANVVSEACI
301: CLQLNNIPYN ILISDCGRQI FLLPQCYAEK QALGEVSAEL LETQVNPAVW EISGHLVLKR EKDYEEASEA NACRLLAEVS LSEERFQESH CSCFSSHCIG

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.