CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46677	Canola	cytosol	89.74	17.59
CDX92792	Canola	cytosol	88.46	17.29
CDX89298	Canola	cytosol	94.87	17.05
CDX97369	Canola	cytosol	93.59	16.9
CDY29254	Canola	cytosol	92.31	16.63
CDY14296	Canola	cytosol	92.31	16.33
AT5G55120.1	Thale cress	cytosol	89.74	16.24
KRH46222	Soybean	cytosol	82.05	16.0
PGSC0003DMT400069484	Potato	cytosol	84.62	15.07
Solyc06g073320.2.1	Tomato	cytosol	83.33	14.87
GSMUA_Achr6P07340_001	Banana	cytosol	80.77	14.72
KRG98713	Soybean	cytosol	82.05	14.71
KRH73776	Soybean	cytosol	82.05	14.58
GSMUA_Achr10P...	Banana	cytosol	80.77	14.52
KRH14364	Soybean	cytosol	80.77	14.45
TraesCS4A01G201200.1	Wheat	cytosol	79.49	14.39
HORVU4Hr1G017030.1	Barley	cytosol	79.49	14.39
TraesCS4B01G105300.2	Wheat	cytosol	79.49	14.39
TraesCS4D01G102200.1	Wheat	cytosol	79.49	14.39
Os12t0190000-01	Rice	cytosol	79.49	14.16
GSMUA_Achr6P12830_001	Banana	cytosol	78.21	14.02
TraesCS5B01G111700.2	Wheat	cytosol	76.92	13.95
TraesCS5D01G122900.1	Wheat	cytosol	76.92	13.95
VIT_19s0090g01000.t01	Wine grape	cytosol	80.77	13.94
EES16792	Sorghum	cytosol	76.92	13.79
TraesCS5A01G107800.2	Wheat	cytosol	75.64	13.72
HORVU5Hr1G031870.1	Barley	cytosol	74.36	13.43
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	96.15	13.0
Zm00001d035337_P001	Maize	cytosol	74.36	12.5
GSMUA_Achr6P17590_001	Banana	cytosol	28.21	10.48
CDY06608	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06609	EnsemblPlantsGene:GSBRNA2T00122751001	GO:A0A078F172	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:CDY06609	ProteinID:CDY06609.1
UniParc:UPI0004EE844E	MapMan:35.1	:	:	:	:

Description

BnaC02g13330D

Coordinates

chrLK031971:-:684150..684649

Molecular Weight (calculated)

8549.4 Da

IEP (calculated)

6.330

GRAVY (calculated)

0.350

Length

78 amino acids

Sequence
(BLAST)

1: MPLDADNSPS VVAINVSPIE YGHVLLIPQV LDCLPQRIDH KSLLLALHMA VEAANPYFRV GYNSLGAFAT INHLHFQA

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.