Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d039530_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | Zm00001d039530_P001 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | Zm00001d039530_P001 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16792 | Sorghum | cytosol | 85.13 | 90.8 |
| Os12t0190000-01 | Rice | cytosol | 75.86 | 80.37 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 73.06 | 78.84 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 73.06 | 78.84 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 72.63 | 78.37 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 72.2 | 77.55 |
| CDY06609 | Canola | cytosol | 12.5 | 74.36 |
| GSMUA_Achr10P... | Banana | cytosol | 65.95 | 70.51 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 65.52 | 69.89 |
| KRH46222 | Soybean | cytosol | 57.54 | 66.75 |
| KRH14364 | Soybean | cytosol | 61.21 | 65.14 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 59.48 | 64.49 |
| KRG98713 | Soybean | cytosol | 59.91 | 63.91 |
| PGSC0003DMT400069484 | Potato | cytosol | 60.13 | 63.7 |
| KRH73776 | Soybean | cytosol | 60.13 | 63.55 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 59.27 | 63.51 |
| Solyc06g073320.2.1 | Tomato | cytosol | 59.7 | 63.39 |
| CDX97369 | Canola | cytosol | 58.84 | 63.19 |
| AT5G55120.1 | Thale cress | cytosol | 58.62 | 63.11 |
| Bra019082.1-P | Field mustard | cytosol | 53.66 | 63.04 |
| CDY46677 | Canola | cytosol | 53.88 | 62.81 |
| CDX89298 | Canola | cytosol | 58.62 | 62.67 |
| Bra026398.1-P | Field mustard | cytosol | 58.62 | 62.67 |
| CDX92792 | Canola | cytosol | 53.88 | 62.66 |
| CDY29254 | Canola | cytosol | 58.19 | 62.36 |
| CDY14296 | Canola | cytosol | 59.05 | 62.13 |
| Bra010424.1-P | Field mustard | cytosol | 58.84 | 61.9 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 59.7 | 61.28 |
| PGSC0003DMT400078783 | Potato | cytosol | 57.76 | 61.19 |
| Solyc02g091510.2.1 | Tomato | nucleus | 57.76 | 61.19 |
| AT4G26850.1 | Thale cress | cytosol | 57.97 | 60.86 |
| CDY06608 | Canola | cytosol | 23.28 | 58.7 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 23.49 | 51.9 |
| Zm00001d042478_P003 | Maize | plastid | 40.73 | 48.46 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.31 | 43.67 |
| Bra035554.1-P | Field mustard | extracellular | 55.6 | 43.58 |
Protein Annotations
| EnsemblPlants:Zm00001d035337_P001 | EnsemblPlants:Zm00001d035337_T001 | EnsemblPlantsGene:Zm00001d035337 | EntrezGene:100283852 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | ProteinID:AQK78694.1 |
| SEG:seg | UniParc:UPI000843EDFC | UniProt:A0A1D6LFH5 | MapMan:10.3.1.5 | : | : |
Description
GDP-L-galactose phosphorylase 1
Coordinates
chr6:-:22131705..22136034
Molecular Weight (calculated)
52008.4 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.064
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMKLTIRRV PTVVSNYQED ADKPRAGCGR NCLGDCCLPA SKLPLYAFKL TPAKGSQEDA ASTKLLVDIL LSEWEDRMTR GLFRYDVTAC ETKVIPGNLG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDPA KFNFTKVGQE EVLFQFENSG GDDSYFLNNA PIIAVDRAPN VIAINVHLSV TLEIQLPFYL FLFPLMFFLQ
201: WFLQVSPIEY GHVLLIPRVL DRLPQRIDPE SFLLALQMAA EGGSPYFRLG YNSLGAFATI NHLHFQAYYL SVPFPVEKAA THKIPLSEDT KKNGVTVSKL
301: INYPVRGLVF EGGNTLDDLA TVVSNACIWL QDNNVPYNVL ISDCGKRVFL FPQCYAEKQA LGEVSQELLD TQVNPAVWEI SGHMVLKRRM DYEEASETSA
401: WKLLAEVSLS EERFEEVKAY IFSAAGLVQY DEEEEEASDG EGPTAYVPVK VTPLPVAEGC LVLP
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDPA KFNFTKVGQE EVLFQFENSG GDDSYFLNNA PIIAVDRAPN VIAINVHLSV TLEIQLPFYL FLFPLMFFLQ
201: WFLQVSPIEY GHVLLIPRVL DRLPQRIDPE SFLLALQMAA EGGSPYFRLG YNSLGAFATI NHLHFQAYYL SVPFPVEKAA THKIPLSEDT KKNGVTVSKL
301: INYPVRGLVF EGGNTLDDLA TVVSNACIWL QDNNVPYNVL ISDCGKRVFL FPQCYAEKQA LGEVSQELLD TQVNPAVWEI SGHMVLKRRM DYEEASETSA
401: WKLLAEVSLS EERFEEVKAY IFSAAGLVQY DEEEEEASDG EGPTAYVPVK VTPLPVAEGC LVLP
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.