CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03044
CDY45203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	CDY03044	AT2G02710.1	17982713
AT4G26850.1	CDY45203	AT2G02710.1	17982713
AT4G26850.1	CDY03044	AT2G02710.1	21798944
AT4G26850.1	CDY45203	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89298	Canola	cytosol	96.3	96.08
CDY06609	Canola	cytosol	16.63	92.31
CDX97369	Canola	cytosol	88.45	88.66
CDY14296	Canola	cytosol	89.61	87.98
AT4G26850.1	Thale cress	cytosol	89.61	87.78
CDX92792	Canola	cytosol	75.98	82.46
CDY46677	Canola	cytosol	74.83	81.41
KRH46222	Soybean	cytosol	67.44	73.0
KRG98713	Soybean	cytosol	71.36	71.03
KRH14364	Soybean	cytosol	70.9	70.41
Solyc06g073320.2.1	Tomato	cytosol	70.21	69.57
KRH73776	Soybean	cytosol	69.98	69.02
PGSC0003DMT400069484	Potato	cytosol	69.28	68.49
VIT_19s0090g01000.t01	Wine grape	cytosol	70.9	67.92
GSMUA_Achr10P...	Banana	cytosol	66.28	66.13
CDY06608	Canola	cytosol	27.71	65.22
Os12t0190000-01	Rice	cytosol	65.13	64.38
TraesCS4A01G201200.1	Wheat	cytosol	63.97	64.27
TraesCS4D01G102200.1	Wheat	cytosol	63.74	64.04
GSMUA_Achr6P12830_001	Banana	cytosol	64.2	63.91
HORVU4Hr1G017030.1	Barley	cytosol	63.51	63.81
TraesCS4B01G105300.2	Wheat	cytosol	63.51	63.81
TraesCS5D01G122900.1	Wheat	cytosol	62.82	63.26
TraesCS5A01G107800.2	Wheat	cytosol	62.36	62.79
TraesCS5B01G111700.2	Wheat	cytosol	62.36	62.79
EES16792	Sorghum	cytosol	63.05	62.76
HORVU5Hr1G031870.1	Barley	cytosol	61.43	61.57
GSMUA_Achr6P07340_001	Banana	cytosol	57.97	58.64
Zm00001d035337_P001	Maize	cytosol	62.36	58.19
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	69.52	52.17
GSMUA_Achr6P17590_001	Banana	cytosol	25.17	51.9

Protein Annotations

EnsemblPlants:CDY29254	EnsemblPlantsGene:GSBRNA2T00042189001	GO:A0A078GVR9	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:CDY29254	ProteinID:CDY29254.1
SEG:seg	UniParc:UPI0004EE9BF5	UniProt:A0A078GVR9	MapMan:10.3.1.5	:	:

Description

BnaC01g19060DBnaC01g19060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVR9]

Coordinates

chrLK032234:-:42315..45019

Molecular Weight (calculated)

47981.3 Da

IEP (calculated)

4.888

GRAVY (calculated)

-0.187

Length

433 amino acids

Sequence
(BLAST)

001: MLKIKRVPTV VSNYQKDESA DESVGCGRNC LGACCINGAR LPLYACKKLD KSGVGEKPVA FLESLVLGEW EDRFQRGLFR YDVTACETKV IPGKYGFVAQ
101: LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDSEV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP QRIDHKSLLL
201: ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKAPSKKL TTTASGVKIS ELLSYPVRSL LFEGGSSMQD LSDTVSDACV CLQSNNIPFN
301: ILITDCGRQI FLMPQCYAEK QALGEVSPEV LETQVNPAVW EISGHMVLKR KEDYEGASEE NAWRLLAEAS LSEERFKEVN ALIFEAIGCS DQEELEGTIV
401: EQDNPSGSVN QKSNRTHGAP ITNGTASECL VLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.