CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03044
CDY45203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	CDY03044	AT2G02710.1	17982713
AT4G26850.1	CDY45203	AT2G02710.1	17982713
AT4G26850.1	CDY03044	AT2G02710.1	21798944
AT4G26850.1	CDY45203	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019082.1-P	Field mustard	cytosol	97.74	98.48
CDX92792	Canola	cytosol	93.47	93.23
CDY06609	Canola	cytosol	17.59	89.74
CDX89298	Canola	cytosol	81.66	74.88
CDY29254	Canola	cytosol	81.41	74.83
CDX97369	Canola	cytosol	80.9	74.54
CDY14296	Canola	cytosol	81.66	73.7
AT4G26850.1	Thale cress	cytosol	79.65	71.72
KRH46222	Soybean	cytosol	68.34	68.0
KRH14364	Soybean	cytosol	70.85	64.68
KRG98713	Soybean	cytosol	70.1	64.14
PGSC0003DMT400069484	Potato	cytosol	70.35	63.93
Solyc06g073320.2.1	Tomato	cytosol	70.1	63.84
KRH73776	Soybean	cytosol	70.35	63.78
GSMUA_Achr10P...	Banana	cytosol	67.34	61.75
VIT_19s0090g01000.t01	Wine grape	cytosol	69.85	61.5
TraesCS4A01G201200.1	Wheat	cytosol	64.32	59.4
GSMUA_Achr6P12830_001	Banana	cytosol	64.82	59.31
TraesCS4D01G102200.1	Wheat	cytosol	64.07	59.16
HORVU4Hr1G017030.1	Barley	cytosol	63.82	58.93
TraesCS4B01G105300.2	Wheat	cytosol	63.82	58.93
Os12t0190000-01	Rice	cytosol	64.82	58.9
TraesCS5D01G122900.1	Wheat	cytosol	63.57	58.84
CDY06608	Canola	cytosol	27.14	58.7
TraesCS5A01G107800.2	Wheat	cytosol	63.07	58.37
TraesCS5B01G111700.2	Wheat	cytosol	63.07	58.37
HORVU5Hr1G031870.1	Barley	cytosol	62.81	57.87
EES16792	Sorghum	cytosol	62.81	57.47
GSMUA_Achr6P07340_001	Banana	cytosol	59.05	54.91
Zm00001d035337_P001	Maize	cytosol	62.81	53.88
GSMUA_Achr6P17590_001	Banana	cytosol	26.13	49.52
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	70.35	48.53

Protein Annotations

EnsemblPlants:CDY46677	EnsemblPlantsGene:GSBRNA2T00085979001	GO:A0A078I996	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:CDY46677	ProteinID:CDY46677.1
UniParc:UPI0004EE4BEF	UniProt:A0A078I996	MapMan:10.3.1.5	:	:	:

Description

BnaA03g48310DBnaA03g48310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I996]

Coordinates

chrLK032681:+:98197..100408

Molecular Weight (calculated)

44607.7 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.181

Length

398 amino acids

Sequence
(BLAST)

001: MLKIKRVPTV VSNYQKNEAS DGSVGGCGRN CLRACCVDMA RLPLYVCNKV EDSGEKAREP PVAFLESLVL GEWEDRYQRG LFRYDLTACV TKVIPGKYGF
101: IAQLNEGRHL KRPTEFRVDK VLQSFDGNKF NFTKVSQEEL LFQFEAGEYE EAQFLPCMPL LAENSPSVVA INVSPIEYGH VLLIPRVLDC LPQRMDHKSM
201: LLALHMASEA KNPYFRVGYN SLGAFATINH LHFQAYYLAM PFPLEKASSK EMITTDNGVK VSELLSYPMR GLLFEGGNSM QDLSDTVSDA CIYLQNSNVP
301: FNVLISNCGR QIFLMPQCYA EKQALGEIST EVWEAQVNPA VWEISGHMVL KRKEDYEGAT EEKACRLLAD ASLSEERFKE VNALIFEAIG CSKPRGGA

Best Arabidopsis Sequence Match ( AT3G30350.2 )
(BLAST)

001: MMRFTIIVIA FLLIIQSLEE EHILVYAHEG GEAGHKSLDY QGDQDSSTLH PKELFDAPRK VRFGRTTRAE KEQVTAMNND SWSFKISGAS KHLIVERKLG
101: FHKRREHKQT NILADHDTTK NTFCKKMMII VNDLTSLPTL EPSTSTNDME KLARLLRDDY PIYSKPRRKP PVNNRAPDKF

Arabidopsis Description

RGF4Root meristem growth factor-like protein [Source:UniProtKB/TrEMBL;Acc:F4J5G8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.