CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07406
KRH58039
KRH69365
KRH74769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	KRH07406	AT2G02710.1	17982713
AT4G26850.1	KRH58039	AT2G02710.1	17982713
AT4G26850.1	KRH69365	AT2G02710.1	17982713
AT4G26850.1	KRH74769	AT2G02710.1	17982713
AT4G26850.1	KRH07406	AT2G02710.1	21798944
AT4G26850.1	KRH58039	AT2G02710.1	21798944
AT4G26850.1	KRH69365	AT2G02710.1	21798944
AT4G26850.1	KRH74769	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46222	Soybean	cytosol	82.99	90.25
CDY06609	Canola	cytosol	14.71	82.05
KRH73776	Soybean	cytosol	77.7	76.99
KRH14364	Soybean	cytosol	77.01	76.83
VIT_19s0090g01000.t01	Wine grape	cytosol	76.09	73.23
CDX97369	Canola	cytosol	71.72	72.22
Bra026398.1-P	Field mustard	cytosol	71.72	71.89
CDX89298	Canola	cytosol	71.72	71.89
CDY29254	Canola	cytosol	71.03	71.36
PGSC0003DMT400069484	Potato	cytosol	71.26	70.78
CDX92792	Canola	cytosol	64.83	70.68
AT4G26850.1	Thale cress	cytosol	71.26	70.14
Bra019082.1-P	Field mustard	cytosol	63.68	70.13
CDY46677	Canola	cytosol	64.14	70.1
CDY14296	Canola	cytosol	71.03	70.07
Solyc06g073320.2.1	Tomato	cytosol	70.34	70.02
Bra010424.1-P	Field mustard	cytosol	70.34	69.39
AT5G55120.1	Thale cress	cytosol	68.05	68.68
GSMUA_Achr10P...	Banana	cytosol	66.67	66.82
TraesCS5D01G122900.1	Wheat	cytosol	65.52	66.28
TraesCS4A01G201200.1	Wheat	cytosol	65.52	66.13
HORVU4Hr1G017030.1	Barley	cytosol	65.52	66.13
TraesCS5A01G107800.2	Wheat	cytosol	65.29	66.05
TraesCS5B01G111700.2	Wheat	cytosol	65.29	66.05
GSMUA_Achr6P12830_001	Banana	cytosol	65.98	65.98
HORVU5Hr1G031870.1	Barley	cytosol	65.52	65.97
TraesCS4B01G105300.2	Wheat	cytosol	65.29	65.89
TraesCS4D01G102200.1	Wheat	cytosol	65.29	65.89
Os12t0190000-01	Rice	cytosol	65.98	65.53
EES16792	Sorghum	cytosol	64.37	64.37
Zm00001d035337_P001	Maize	cytosol	63.91	59.91
GSMUA_Achr6P07340_001	Banana	cytosol	58.39	59.35
CDY06608	Canola	cytosol	24.37	57.61
GSMUA_Achr6P17590_001	Banana	cytosol	23.91	49.52
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	63.45	47.83
Bra035554.1-P	Field mustard	extracellular	64.83	47.64

Protein Annotations

MapMan:10.3.1.5	EntrezGene:100785588	EMBL:ACUP02010916	InterPro:GDPGP	EnsemblPlantsGene:GLYMA_18G092900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0080048	UniProt:I1N0L1
EnsemblPlants:KRG98713	ProteinID:KRG98713	ProteinID:KRG98713.1	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	UniParc:UPI000233E28D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:9360796..9364415

Molecular Weight (calculated)

48567.6 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.074

Length

435 amino acids

Sequence
(BLAST)

001: MLSIKRVPTV VSNYQKEETG EAAAGGCGRN CLKSCCIQGA RLPLYAFKKV DKVCGNELPL LGCKEQHPVA FLDSLVLGEW EDRMQRGLFR YDVTACETKV
101: IPGEYGFIAQ LNEGRHLKKR PTEFRVDKVL QPFDENKFNF TKVGQEEVLF QLEASNDGEV QFFPNAPIDV ENSPSFVAIN VSPIEYGHVL LIPRIFECLP
201: QRIDHASFLL ALQMAVEARN PYFRLGYNSL GAFATINHLH FQAYYLALPF PIEKAPTKKI AKLSGGVIIS KLLNYPVRGL VFEGGHTLED LANAVSEACI
301: CLQHNNIPYN VLISDCGRQI FLLPQCYAEK QALGEVSPEL LETQVNPAVW EISGHMVLKR KKDYEEASEA NAWRLLAEVS LSEERLLEVT ALVFQAITSS
401: VEMNVKPQRL EEVDAVSPNA QHAMVAGSHE CLVLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.