Factsheet for Solyc06g073320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 23267461
nucleus: 23267461

gfp PMID: 23267461 doi

LY Wang, D Li, YS Deng, W Lv, QW Meng

College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong 271018, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010480.2.1
Solyc05g007020.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	Solyc01g010480.2.1	AT2G02710.1	17982713
AT4G26850.1	Solyc05g007020.2.1	AT2G02710.1	17982713
AT4G26850.1	Solyc01g010480.2.1	AT2G02710.1	21798944
AT4G26850.1	Solyc05g007020.2.1	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069484	Potato	cytosol	95.65	95.43
CDY06609	Canola	cytosol	14.87	83.33
KRH46222	Soybean	cytosol	66.36	72.5
KRH14364	Soybean	cytosol	71.4	71.56
CDX92792	Canola	cytosol	64.76	70.93
Bra019082.1-P	Field mustard	cytosol	63.62	70.38
KRG98713	Soybean	cytosol	70.02	70.34
CDY29254	Canola	cytosol	69.57	70.21
CDY46677	Canola	cytosol	63.84	70.1
AT5G55120.1	Thale cress	cytosol	69.11	70.07
Bra010424.1-P	Field mustard	cytosol	70.71	70.07
CDY14296	Canola	cytosol	70.48	69.84
CDX97369	Canola	cytosol	68.88	69.68
KRH73776	Soybean	cytosol	69.79	69.48
AT4G26850.1	Thale cress	cytosol	70.25	69.46
CDX89298	Canola	cytosol	68.88	69.35
Bra026398.1-P	Field mustard	cytosol	68.88	69.35
VIT_19s0090g01000.t01	Wine grape	cytosol	71.4	69.03
GSMUA_Achr10P...	Banana	cytosol	67.05	67.51
TraesCS4A01G201200.1	Wheat	cytosol	65.22	66.13
TraesCS4D01G102200.1	Wheat	cytosol	64.99	65.89
TraesCS4B01G105300.2	Wheat	cytosol	64.53	65.43
TraesCS5D01G122900.1	Wheat	cytosol	64.3	65.35
Os12t0190000-01	Rice	cytosol	65.45	65.3
HORVU5Hr1G031870.1	Barley	cytosol	64.53	65.28
HORVU4Hr1G017030.1	Barley	cytosol	64.3	65.2
TraesCS5A01G107800.2	Wheat	cytosol	64.07	65.12
GSMUA_Achr6P12830_001	Banana	cytosol	64.76	65.06
TraesCS5B01G111700.2	Wheat	cytosol	63.84	64.88
EES16792	Sorghum	cytosol	63.84	64.14
GSMUA_Achr6P07340_001	Banana	cytosol	61.33	62.62
Solyc02g091510.2.1	Tomato	nucleus	59.95	59.82
CDY06608	Canola	cytosol	25.17	59.78
Zm00001d035337_P001	Maize	cytosol	63.39	59.7
GSMUA_Achr6P17590_001	Banana	cytosol	25.63	53.33
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	64.07	48.53
Bra035554.1-P	Field mustard	extracellular	64.3	47.47

Protein Annotations

EMBL:JQ517313	EnsemblPlants:Solyc06g073320.2.1	EnsemblPlantsGene:Solyc06g073320.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11
UniParc:UPI00025734F2	UniProt:H9D2D6	MapMan:10.3.1.5	:	:	:

Description

GDP-L-galactose phosphorylase [Source:UniProtKB/TrEMBL;Acc:H9D2D6]

Coordinates

chr6:+:45177041..45180277

Molecular Weight (calculated)

48659.8 Da

IEP (calculated)

4.413

GRAVY (calculated)

-0.214

Length

437 amino acids

Sequence
(BLAST)

001: MMLKIKRVPT LVSNFQKDEA DEIAARGAGC GRNCLRNCCL PGSKLPLYGF KNLSYGKSVA DETKESPIDF LESLVLGEWE DRQQKGLFRY DVTACETKVI
101: PGEYGFVAQL NEGRHLKKRP TEFRVDKVLQ PFDGSKFNFT KVGQEELLFQ FEASEEDEVQ LYPDAPIDPE KSPSVVAINV SPIEYGHVLL IPKVLECLPQ
201: RIDRDSFLLA LHMAAEAANP YFRLGYNSLG AFATINHLHF QAYFLAVQFP IEKAPTQKIT VTDAGVKISE MLHYPVRGLV FEGGNTLEDL ADVVSDSCIC
301: LQENNIPYNV LISDSGKRIF LLPQCYAEKQ ALGEVSAELL DTQVNPAVWE ISGHMVLKRK EDYEGATEAN AWRLLAEVSL SEARFQEVTA LIFEAISLSV
401: EENEDGTDGS PEDLDVTPPQ PMEEIDGLNT HSTMVPA

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.