CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07406
KRH58039
KRH69365
KRH74769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	KRH07406	AT2G02710.1	17982713
AT4G26850.1	KRH58039	AT2G02710.1	17982713
AT4G26850.1	KRH69365	AT2G02710.1	17982713
AT4G26850.1	KRH74769	AT2G02710.1	17982713
AT4G26850.1	KRH07406	AT2G02710.1	21798944
AT4G26850.1	KRH58039	AT2G02710.1	21798944
AT4G26850.1	KRH69365	AT2G02710.1	21798944
AT4G26850.1	KRH74769	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14364	Soybean	cytosol	90.2	90.83
CDY06609	Canola	cytosol	14.58	82.05
KRH46222	Soybean	cytosol	71.75	78.75
KRG98713	Soybean	cytosol	76.99	77.7
VIT_19s0090g01000.t01	Wine grape	cytosol	73.8	71.68
CDX92792	Canola	cytosol	64.46	70.93
Bra026398.1-P	Field mustard	cytosol	69.93	70.74
CDX89298	Canola	cytosol	69.93	70.74
Bra019082.1-P	Field mustard	cytosol	63.33	70.38
CDY46677	Canola	cytosol	63.78	70.35
CDY29254	Canola	cytosol	69.02	69.98
PGSC0003DMT400069484	Potato	cytosol	69.7	69.86
Solyc06g073320.2.1	Tomato	cytosol	69.48	69.79
CDX97369	Canola	cytosol	68.34	69.44
AT4G26850.1	Thale cress	cytosol	69.7	69.23
CDY14296	Canola	cytosol	69.02	68.71
Bra010424.1-P	Field mustard	cytosol	68.56	68.25
AT5G55120.1	Thale cress	cytosol	66.51	67.75
Os12t0190000-01	Rice	cytosol	66.06	66.21
GSMUA_Achr10P...	Banana	cytosol	65.38	66.13
TraesCS4D01G102200.1	Wheat	cytosol	64.24	65.43
TraesCS4A01G201200.1	Wheat	cytosol	64.24	65.43
TraesCS4B01G105300.2	Wheat	cytosol	64.01	65.2
TraesCS5A01G107800.2	Wheat	cytosol	63.55	64.88
TraesCS5B01G111700.2	Wheat	cytosol	63.33	64.65
HORVU5Hr1G031870.1	Barley	cytosol	63.55	64.58
HORVU4Hr1G017030.1	Barley	cytosol	63.33	64.5
TraesCS5D01G122900.1	Wheat	cytosol	63.1	64.42
GSMUA_Achr6P12830_001	Banana	cytosol	63.78	64.37
EES16792	Sorghum	cytosol	63.78	64.37
GSMUA_Achr6P07340_001	Banana	cytosol	58.77	60.28
Zm00001d035337_P001	Maize	cytosol	63.55	60.13
CDY06608	Canola	cytosol	24.15	57.61
GSMUA_Achr6P17590_001	Banana	cytosol	23.92	50.0
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	62.41	47.49
Bra035554.1-P	Field mustard	extracellular	63.55	47.13

Protein Annotations

MapMan:10.3.1.5	EntrezGene:100800738	EMBL:ACUP02001288	InterPro:GDPGP	EnsemblPlantsGene:GLYMA_02G292800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0080048	UniProt:I1JJB8
EnsemblPlants:KRH73776	ProteinID:KRH73776	ProteinID:KRH73776.1	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	UniParc:UPI0002337375

Description

hypothetical protein

Coordinates

chr2:-:47164820..47167693

Molecular Weight (calculated)

48933.6 Da

IEP (calculated)

4.724

GRAVY (calculated)

-0.109

Length

439 amino acids

Sequence
(BLAST)

001: MMLKIKRVPT VVSNFQKDDA ADSPRPVGGC GRNCLKACCI PDAKLPLYGF KKANIGKDLA LHACAGEPPL AFLDSLLLGE WEDRMQRGLF RYDVTACETK
101: VIPGEYGFVA QLNEGRHLKK RPTEFRVDKV LQPFDENKFN FTKVGQEEVL FQFEASEDGQ VQFFPNAPVD VDNSPSFVAI NVSPIEYGHV LLIPRIFECL
201: PQRIDRESFL LALQMAVEAD NPYFRLGYNS LGAFATINHL HFQAYYLALP FPIEKAPTKR IASVNGGVKI SELLKYPVRG FVFEGGEMLE DLSNVVSDAC
301: ICLQNNNIPF NVLISDCGKQ VYLLPQCYAE KQALGEVNAE LLDTQVNPAV WEISGHMVLK RRKDYDEASE GNAWRLLAEV SLSQERFQEV NDLVFEAIGC
401: GELEDVNVQS VKKEVDAVST SEHPTVVVVA GSQECVVLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.