Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024812.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | Bra024812.1-P | AT2G02710.1 | 17982713 |
| AT4G26850.1 | Bra024812.1-P | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46677 | Canola | cytosol | 98.48 | 97.74 |
| Bra026398.1-P | Field mustard | cytosol | 81.52 | 74.19 |
| Bra010424.1-P | Field mustard | cytosol | 80.76 | 72.34 |
| AT4G26850.1 | Thale cress | cytosol | 79.49 | 71.04 |
| KRH46222 | Soybean | cytosol | 68.35 | 67.5 |
| KRH14364 | Soybean | cytosol | 70.89 | 64.22 |
| PGSC0003DMT400069484 | Potato | cytosol | 70.63 | 63.7 |
| KRG98713 | Soybean | cytosol | 70.13 | 63.68 |
| Solyc06g073320.2.1 | Tomato | cytosol | 70.38 | 63.62 |
| KRH73776 | Soybean | cytosol | 70.38 | 63.33 |
| GSMUA_Achr10P... | Banana | cytosol | 67.34 | 61.29 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 69.87 | 61.06 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 65.06 | 59.08 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 64.3 | 58.93 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 64.05 | 58.7 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 63.8 | 58.47 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 63.8 | 58.47 |
| Os12t0190000-01 | Rice | cytosol | 64.81 | 58.45 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 63.54 | 58.37 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 63.04 | 57.91 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 63.04 | 57.91 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 62.78 | 57.41 |
| EES16792 | Sorghum | cytosol | 63.04 | 57.24 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 58.99 | 54.44 |
| Zm00001d035337_P001 | Maize | cytosol | 63.04 | 53.66 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 25.82 | 48.57 |
| Bra035554.1-P | Field mustard | extracellular | 71.9 | 47.97 |
Protein Annotations
| EnsemblPlants:Bra019082.1 | EnsemblPlants:Bra019082.1-P | EnsemblPlantsGene:Bra019082 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | UniParc:UPI000254125E | UniProt:M4DRD9 |
| MapMan:10.3.1.5 | : | : | : | : | : |
Description
AT4G26850 (E=9e-185) VTC2 | VTC2 (vitamin c defective 2); GDP-D-glucose phosphorylase/ GDP-galactose:glucose-1-phosphate guanyltransferase/ GDP-galactose:mannose-1-phosphate guanyltransferase/ GDP-galactose:myoinositol-1-phosphate guanyltransferase/ galactose-1-phosphate guanylyltra
Coordinates
chrA03:-:26416662..26418251
Molecular Weight (calculated)
44235.2 Da
IEP (calculated)
5.203
GRAVY (calculated)
-0.165
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNYQKDEAS DGSVGGCGRN CLRACCVDMA RLPLYVCKKV EDSGEKAREP PVAFLESLVL GEWEDRYQRG LFRYDLTACV IPGKYGFIAQ
101: LNEGRHLKRP TEFRVDKVLQ SFDGNKFNFT KVSQEELLFQ FEAGEYEEAQ VLPCMPLLAE NSPSVVAINV SPIEYGHVLL IPRVLDCLPQ RMDHKSMLLA
201: LHMASEAKNP YFRVGYNSLG AFATINHLHF QAYYLAMPFP LEKASSKEMI TTDNGVKVSE LLSYPMRGLL FEGGNSMQDL SDTVSDACIY LQNSNVPFNV
301: LISNCGRQIF LMPQCYAEKQ ALGEVSTEVW EAQVNPAVWE ISGHMVLKRK EDYEGATEEK ACMLLADASL SEERFREVNA LIFEAIGCSK PRGGA
101: LNEGRHLKRP TEFRVDKVLQ SFDGNKFNFT KVSQEELLFQ FEAGEYEEAQ VLPCMPLLAE NSPSVVAINV SPIEYGHVLL IPRVLDCLPQ RMDHKSMLLA
201: LHMASEAKNP YFRVGYNSLG AFATINHLHF QAYYLAMPFP LEKASSKEMI TTDNGVKVSE LLSYPMRGLL FEGGNSMQDL SDTVSDACIY LQNSNVPFNV
301: LISNCGRQIF LMPQCYAEKQ ALGEVSTEVW EAQVNPAVWE ISGHMVLKRK EDYEGATEEK ACMLLADASL SEERFREVNA LIFEAIGCSK PRGGA
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.