Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026398.1-P | Field mustard | cytosol | 89.59 | 91.24 |
| CDX89298 | Canola | cytosol | 89.59 | 91.24 |
| CDY29254 | Canola | cytosol | 87.78 | 89.61 |
| CDX97369 | Canola | cytosol | 85.07 | 87.04 |
| CDY14296 | Canola | cytosol | 86.65 | 86.85 |
| Bra010424.1-P | Field mustard | cytosol | 84.62 | 84.81 |
| CDX92792 | Canola | cytosol | 73.08 | 80.95 |
| CDY46677 | Canola | cytosol | 71.72 | 79.65 |
| Bra019082.1-P | Field mustard | cytosol | 71.04 | 79.49 |
| KRH46222 | Soybean | cytosol | 66.97 | 74.0 |
| AT5G55120.1 | Thale cress | cytosol | 71.72 | 73.55 |
| KRG98713 | Soybean | cytosol | 70.14 | 71.26 |
| KRH14364 | Soybean | cytosol | 69.46 | 70.41 |
| PGSC0003DMT400069484 | Potato | cytosol | 69.68 | 70.32 |
| Solyc06g073320.2.1 | Tomato | cytosol | 69.46 | 70.25 |
| KRH73776 | Soybean | cytosol | 69.23 | 69.7 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 69.0 | 67.48 |
| GSMUA_Achr10P... | Banana | cytosol | 65.16 | 66.36 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 62.67 | 64.27 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 63.12 | 64.14 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 62.44 | 64.04 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 62.22 | 63.81 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 62.22 | 63.81 |
| Os12t0190000-01 | Rice | cytosol | 62.9 | 63.47 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 60.86 | 62.56 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 60.86 | 62.56 |
| EES16792 | Sorghum | cytosol | 61.31 | 62.3 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 60.86 | 62.27 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 60.41 | 62.09 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 56.56 | 58.41 |
| Zm00001d035337_P001 | Maize | cytosol | 60.86 | 57.97 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 24.43 | 51.43 |
Protein Annotations
| MapMan:10.3.1.5 | EntrezGene:828792 | ProteinID:AAM34266.1 | ProteinID:AEE85260.1 | EMBL:AK226394 | ArrayExpress:AT4G26850 |
| EnsemblPlantsGene:AT4G26850 | RefSeq:AT4G26850 | TAIR:AT4G26850 | RefSeq:AT4G26850-TAIR-G | EnsemblPlants:AT4G26850.1 | TAIR:AT4G26850.1 |
| EMBL:AY056134 | EMBL:AY093138 | Unigene:At.23783 | EMBL:BT006589 | ProteinID:CAB36531.1 | ProteinID:CAB79540.1 |
| InterPro:GDPGP | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005085 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005975 | GO:GO:0006006 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008928 |
| GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009753 | GO:GO:0009987 | GO:GO:0010471 | GO:GO:0010472 | GO:GO:0010473 | GO:GO:0010474 |
| GO:GO:0010475 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0016787 | GO:GO:0019853 |
| GO:GO:0042742 | GO:GO:0052544 | GO:GO:0065009 | GO:GO:0080046 | GO:GO:0080047 | GO:GO:0080048 |
| RefSeq:NP_567759.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 |
| UniProt:Q8RWE8 | UniParc:UPI00000A1922 | Symbol:VTC2 | : | : | : |
Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
Coordinates
chr4:-:13498956..13501701
Molecular Weight (calculated)
48972.6 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.163
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.