Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G111100.2 | |
| TraesCS3B01G129800.4 | |
| TraesCS3D01G113100.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G111700.2 | Wheat | cytosol | 97.91 | 97.91 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 97.21 | 97.21 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 90.23 | 89.81 |
| Os12t0190000-01 | Rice | cytosol | 85.12 | 83.56 |
| CDY06609 | Canola | cytosol | 13.95 | 76.92 |
| EES16792 | Sorghum | cytosol | 77.67 | 76.78 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 76.51 | 76.33 |
| Zm00001d035337_P001 | Maize | cytosol | 78.84 | 73.06 |
| GSMUA_Achr10P... | Banana | cytosol | 71.4 | 70.74 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 69.07 | 68.28 |
| KRH46222 | Soybean | cytosol | 63.02 | 67.75 |
| KRG98713 | Soybean | cytosol | 66.28 | 65.52 |
| PGSC0003DMT400069484 | Potato | cytosol | 66.05 | 64.84 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 64.88 | 64.43 |
| Solyc06g073320.2.1 | Tomato | cytosol | 65.35 | 64.3 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 63.95 | 64.25 |
| KRH14364 | Soybean | cytosol | 64.65 | 63.76 |
| CDY46677 | Canola | cytosol | 58.84 | 63.57 |
| Bra019082.1-P | Field mustard | cytosol | 58.37 | 63.54 |
| CDX97369 | Canola | cytosol | 63.49 | 63.19 |
| AT5G55120.1 | Thale cress | cytosol | 63.26 | 63.11 |
| KRH73776 | Soybean | cytosol | 64.42 | 63.1 |
| CDX92792 | Canola | cytosol | 58.37 | 62.91 |
| CDY29254 | Canola | cytosol | 63.26 | 62.82 |
| CDY14296 | Canola | cytosol | 64.42 | 62.81 |
| PGSC0003DMT400078783 | Potato | cytosol | 63.95 | 62.79 |
| Bra010424.1-P | Field mustard | cytosol | 64.19 | 62.59 |
| CDX89298 | Canola | cytosol | 63.02 | 62.44 |
| Bra026398.1-P | Field mustard | cytosol | 63.02 | 62.44 |
| Solyc02g091510.2.1 | Tomato | nucleus | 63.26 | 62.1 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 64.65 | 61.5 |
| AT4G26850.1 | Thale cress | cytosol | 62.56 | 60.86 |
| TraesCS3D01G388200.1 | Wheat | cytosol | 45.12 | 56.56 |
| CDY06608 | Canola | cytosol | 23.72 | 55.43 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 26.28 | 53.81 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.84 | 43.85 |
| Bra035554.1-P | Field mustard | extracellular | 60.23 | 43.75 |
| TraesCS5D01G056000.1 | Wheat | cytosol | 24.42 | 28.46 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G122900.1 | EnsemblPlantsGene:TraesCS5D01G122900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0080048 |
| InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | MapMan:10.3.1.5 | : | : |
Description
No Description!
Coordinates
chr5D:-:178551280..178554253
Molecular Weight (calculated)
47792.0 Da
IEP (calculated)
4.921
GRAVY (calculated)
-0.105
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTIKRVPT VVSNYQEDAG ERPRGGCGRN CLGHCCLPVS ELPVYAFKAN PTKLPLQEDA VPTDFFINLL LGQWEDRMTQ GLFRYDVTAC ETKVIPGNLG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EALFQFENSG SDDSYFLRSA AATVADRAPN VVAINVSPIE YGHVLLIPRV LDHLPQRIDQ
201: ESFLLALHMA AEAARPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEEGNTLNDL ANLVSSACIW
301: LQDNNVPYNV LISDSGRKIF LFPQCYAEKQ ALGEVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAEVSL SEARFEEVKA YIFDAACLVQ
401: SQVEEETDDA IYAPVPVGPS AVGEGCLVIP
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EALFQFENSG SDDSYFLRSA AATVADRAPN VVAINVSPIE YGHVLLIPRV LDHLPQRIDQ
201: ESFLLALHMA AEAARPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEEGNTLNDL ANLVSSACIW
301: LQDNNVPYNV LISDSGRKIF LFPQCYAEKQ ALGEVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAEVSL SEARFEEVKA YIFDAACLVQ
401: SQVEEETDDA IYAPVPVGPS AVGEGCLVIP
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.