Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400045475 | |
| PGSC0003DMT400068851 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073320.2.1 | Tomato | cytosol | 95.43 | 95.65 |
| CDY06609 | Canola | cytosol | 15.07 | 84.62 |
| KRH46222 | Soybean | cytosol | 67.35 | 73.75 |
| KRH14364 | Soybean | cytosol | 71.0 | 71.33 |
| KRG98713 | Soybean | cytosol | 70.78 | 71.26 |
| CDX92792 | Canola | cytosol | 64.38 | 70.68 |
| Bra019082.1-P | Field mustard | cytosol | 63.7 | 70.63 |
| CDX97369 | Canola | cytosol | 69.63 | 70.6 |
| CDY46677 | Canola | cytosol | 63.93 | 70.35 |
| Bra010424.1-P | Field mustard | cytosol | 70.32 | 69.84 |
| KRH73776 | Soybean | cytosol | 69.86 | 69.7 |
| AT4G26850.1 | Thale cress | cytosol | 70.32 | 69.68 |
| CDY14296 | Canola | cytosol | 70.09 | 69.61 |
| AT5G55120.1 | Thale cress | cytosol | 68.49 | 69.61 |
| CDX89298 | Canola | cytosol | 68.95 | 69.59 |
| Bra026398.1-P | Field mustard | cytosol | 68.95 | 69.59 |
| CDY29254 | Canola | cytosol | 68.49 | 69.28 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 71.23 | 69.03 |
| GSMUA_Achr10P... | Banana | cytosol | 67.12 | 67.74 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 65.3 | 66.2 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 64.84 | 66.05 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 64.84 | 65.89 |
| Os12t0190000-01 | Rice | cytosol | 65.75 | 65.75 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 64.61 | 65.66 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 64.38 | 65.58 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 64.16 | 65.35 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 64.16 | 65.2 |
| EES16792 | Sorghum | cytosol | 64.61 | 65.06 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 63.93 | 64.97 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 64.38 | 64.83 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 61.19 | 62.62 |
| PGSC0003DMT400078783 | Potato | cytosol | 60.5 | 60.5 |
| Zm00001d035337_P001 | Maize | cytosol | 63.7 | 60.13 |
| CDY06608 | Canola | cytosol | 24.89 | 59.24 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 25.34 | 52.86 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.7 | 48.35 |
| Bra035554.1-P | Field mustard | extracellular | 63.93 | 47.3 |
Protein Annotations
| EMBL:JN000934 | EnsemblPlants:PGSC0003DMT400069484 | EnsemblPlantsGene:PGSC0003DMG400027012 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | PGSC:PGSC0003DMG400027012 | ProteinID:AEQ64271 |
| ProteinID:AEQ64271.1 | UniParc:UPI000295FF24 | UniProt:M1CKI6 | MapMan:10.3.1.5 | : | : |
Description
GDP-L-galactose phosphorylase [Source:PGSC_GENE;Acc:PGSC0003DMG400027012]
Coordinates
chr6:+:53844153..53847453
Molecular Weight (calculated)
48705.9 Da
IEP (calculated)
4.430
GRAVY (calculated)
-0.211
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLKIKRVPT LVSNFQKDEA DEIGARGAGC GRNCLRNCCL PGSKLPLYGF KNLSYGKSVA ADETKESPID FLESLVLGEW EDRQQKGLFR YDVTACETKV
101: IPGEYGFVAQ LNEGRHLKKR PTEFRVDKVL QPFDGSKFNF TKVGQEELLF QFEASEEDEV QLYPDAPIDP EKSPSVVAIN VSPIEYGHVL LIPKVLECLP
201: QRIDRDSFLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYFLAVQF PIEKAPTQKI TVTDAGVKIS EMLNYPVRGL VFEGGNTLED LANVVSDSCI
301: CLQENNIPYN VLISDSGKRI FLLPQCYAEK QALGEVSAEL LDTQVNPAVW EISGHMVLKR KEDYEGATEA NAWRLLAEVS LSEARFQEVT ALIFEAISLS
401: VEENENATDG SPEDLDVTPP QPMEEIDGLN THSTMVPA
101: IPGEYGFVAQ LNEGRHLKKR PTEFRVDKVL QPFDGSKFNF TKVGQEELLF QFEASEEDEV QLYPDAPIDP EKSPSVVAIN VSPIEYGHVL LIPKVLECLP
201: QRIDRDSFLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYFLAVQF PIEKAPTQKI TVTDAGVKIS EMLNYPVRGL VFEGGNTLED LANVVSDSCI
301: CLQENNIPYN VLISDSGKRI FLLPQCYAEK QALGEVSAEL LDTQVNPAVW EISGHMVLKR KEDYEGATEA NAWRLLAEVS LSEARFQEVT ALIFEAISLS
401: VEENENATDG SPEDLDVTPP QPMEEIDGLN THSTMVPA
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.