Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
- plastid 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024812.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | Bra024812.1-P | AT2G02710.1 | 17982713 |
| AT4G26850.1 | Bra024812.1-P | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14296 | Canola | cytosol | 96.15 | 96.15 |
| Bra026398.1-P | Field mustard | cytosol | 87.3 | 88.71 |
| AT4G26850.1 | Thale cress | cytosol | 84.81 | 84.62 |
| Bra019082.1-P | Field mustard | cytosol | 72.34 | 80.76 |
| KRH46222 | Soybean | cytosol | 65.53 | 72.25 |
| Solyc06g073320.2.1 | Tomato | cytosol | 70.07 | 70.71 |
| KRG98713 | Soybean | cytosol | 69.39 | 70.34 |
| PGSC0003DMT400069484 | Potato | cytosol | 69.84 | 70.32 |
| KRH14364 | Soybean | cytosol | 69.16 | 69.95 |
| KRH73776 | Soybean | cytosol | 68.25 | 68.56 |
| GSMUA_Achr10P... | Banana | cytosol | 67.12 | 68.2 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 68.93 | 67.26 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 63.49 | 64.97 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 63.27 | 64.73 |
| Os12t0190000-01 | Rice | cytosol | 64.17 | 64.61 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 63.72 | 64.6 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 63.04 | 64.5 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 63.04 | 64.5 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 62.59 | 64.19 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 61.9 | 63.49 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 61.9 | 63.49 |
| EES16792 | Sorghum | cytosol | 62.36 | 63.22 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 61.9 | 63.19 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 58.05 | 59.81 |
| Zm00001d035337_P001 | Maize | cytosol | 61.9 | 58.84 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 24.72 | 51.9 |
| Bra035554.1-P | Field mustard | extracellular | 68.71 | 51.18 |
Protein Annotations
| EMBL:KY354436 | EnsemblPlants:Bra010424.1 | EnsemblPlants:Bra010424.1-P | EnsemblPlantsGene:Bra010424 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | SEG:seg |
| UniParc:UPI0002545857 | UniProt:M4D1S4 | MapMan:10.3.1.5 | : | : | : |
Description
AT4G26850 (E=4e-223) VTC2 | VTC2 (vitamin c defective 2); GDP-D-glucose phosphorylase/ GDP-galactose:glucose-1-phosphate guanyltransferase/ GDP-galactose:mannose-1-phosphate guanyltransferase/ GDP-galactose:myoinositol-1-phosphate guanyltransferase/ galactose-1-phosphate guanylyltra
Coordinates
chrA08:+:14466844..14468556
Molecular Weight (calculated)
48815.5 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.142
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNYQKDEAS DESVGCGRNC LGACCLNGAR LPLYSCKKLE NSGTGEKVVI SHEAKEPPVA FLESLVLGEW EDRFQRGLFR YDVTACETKV
101: IPGKYGFVAQ LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDCDV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP
201: QRIDHKSLLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKALSKKM ITTVSGVKIS ELVNYPVRSL LFEGGNSMQD LSDTVSDACV
301: CLQENNIPFN ILISDSGRQI FLMPQCYAEK QALGEVSPEL LETQVNPAVW EISGHMVLKR KEDYEGASEK NAWRLLAEAS LSGERFKEVN ALIFEAIGCS
401: NQEEELEGIL VQPSGSVNQT GNRTLGGPIA NGTASECLVL Q
101: IPGKYGFVAQ LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDCDV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP
201: QRIDHKSLLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKALSKKM ITTVSGVKIS ELVNYPVRSL LFEGGNSMQD LSDTVSDACV
301: CLQENNIPFN ILISDSGRQI FLMPQCYAEK QALGEVSPEL LETQVNPAVW EISGHMVLKR KEDYEGASEK NAWRLLAEAS LSGERFKEVN ALIFEAIGCS
401: NQEEELEGIL VQPSGSVNQT GNRTLGGPIA NGTASECLVL Q
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.