Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G020100.9 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | HORVU3Hr1G020100.9 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | HORVU3Hr1G020100.9 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G201200.1 | Wheat | cytosol | 96.98 | 96.98 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 96.75 | 96.75 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 96.29 | 96.29 |
| CDY06609 | Canola | cytosol | 14.39 | 79.49 |
| GSMUA_Achr10P... | Banana | cytosol | 75.64 | 75.12 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 74.25 | 74.07 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 73.55 | 72.87 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 66.82 | 67.29 |
| KRH46222 | Soybean | cytosol | 61.95 | 66.75 |
| KRG98713 | Soybean | cytosol | 66.13 | 65.52 |
| KRH14364 | Soybean | cytosol | 65.43 | 64.68 |
| CDX97369 | Canola | cytosol | 64.73 | 64.58 |
| Solyc06g073320.2.1 | Tomato | cytosol | 65.2 | 64.3 |
| PGSC0003DMT400069484 | Potato | cytosol | 64.97 | 63.93 |
| CDY46677 | Canola | cytosol | 58.93 | 63.82 |
| Bra019082.1-P | Field mustard | cytosol | 58.47 | 63.8 |
| CDY29254 | Canola | cytosol | 63.81 | 63.51 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 63.81 | 63.51 |
| AT5G55120.1 | Thale cress | cytosol | 63.34 | 63.34 |
| KRH73776 | Soybean | cytosol | 64.5 | 63.33 |
| CDY14296 | Canola | cytosol | 64.73 | 63.27 |
| CDX92792 | Canola | cytosol | 58.47 | 63.16 |
| CDX89298 | Canola | cytosol | 63.57 | 63.13 |
| Bra026398.1-P | Field mustard | cytosol | 63.57 | 63.13 |
| Bra010424.1-P | Field mustard | cytosol | 64.5 | 63.04 |
| PGSC0003DMT400078783 | Potato | cytosol | 63.81 | 62.79 |
| AT4G26850.1 | Thale cress | cytosol | 63.81 | 62.22 |
| Solyc02g091510.2.1 | Tomato | nucleus | 63.11 | 62.1 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 64.73 | 61.73 |
| HORVU6Hr1G054830.1 | Barley | cytosol | 14.15 | 58.1 |
| CDY06608 | Canola | cytosol | 24.36 | 57.07 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 27.61 | 56.67 |
| HORVU5Hr1G075160.1 | Barley | plastid | 37.59 | 52.09 |
| HORVU3Hr1G089030.13 | Barley | plastid | 47.1 | 49.03 |
| HORVU5Hr1G100430.1 | Barley | mitochondrion | 29.0 | 47.35 |
| HORVU6Hr1G083130.2 | Barley | extracellular | 25.29 | 45.61 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 59.63 | 44.54 |
| Bra035554.1-P | Field mustard | extracellular | 60.56 | 44.09 |
| HORVU5Hr1G011170.1 | Barley | cytosol | 25.75 | 30.08 |
Protein Annotations
| EMBL:AK358028 | EnsemblPlants:HORVU4Hr1G017030.1 | EnsemblPlantsGene:HORVU4Hr1G017030 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | PFAM:PF16269 | SEG:seg |
| UniParc:UPI0002005410 | UniProt:F2D2C1 | MapMan:10.3.1.5 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D2C1]
Coordinates
chrchr4H:+:72684241..72689061
Molecular Weight (calculated)
47851.0 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.157
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKLTIKRV ATVLSNYQEE GAGGCGRNCL GDCCLPASKL PLYAFKADPK KPAQDDELPT EFFLNSLLLA QWEDRVARGL FRYDVTACET KVIPGELGFV
101: AQLNEGRHLK KRPTEFRVDR VLQPFDSAKF NFTKVGQEEV LFRFENGGGD SSYFLENAPS IEGDRAPSVV AINVSPIEYG HVLLIPRVLD RLPQQIDPES
201: FLLALHMAAE AASPYFRLGY NSLGAFATIN HLHFQAYYLS VPFPVEKAPT KKIPLAKCAL NSGVKVSKLT NFPVRGLVFE RGNTLKDLAD VVTNACIWLQ
301: ENNVPFNVLI SDSGRRIFVF PQCYAEKQAL GEVSQDLLDT QVNPAVWEIS GHIVLKRRTD FEEASEASAW RLLAEVSLSE ERFEEVKACI FQAAGLTESD
401: EEEESNEPPY ASSSSVPLAS SRMTEGCLVL Q
101: AQLNEGRHLK KRPTEFRVDR VLQPFDSAKF NFTKVGQEEV LFRFENGGGD SSYFLENAPS IEGDRAPSVV AINVSPIEYG HVLLIPRVLD RLPQQIDPES
201: FLLALHMAAE AASPYFRLGY NSLGAFATIN HLHFQAYYLS VPFPVEKAPT KKIPLAKCAL NSGVKVSKLT NFPVRGLVFE RGNTLKDLAD VVTNACIWLQ
301: ENNVPFNVLI SDSGRRIFVF PQCYAEKQAL GEVSQDLLDT QVNPAVWEIS GHIVLKRRTD FEEASEASAW RLLAEVSLSE ERFEEVKACI FQAAGLTESD
401: EEEESNEPPY ASSSSVPLAS SRMTEGCLVL Q
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.