Factsheet for PGSC0003DMT400078783

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091510.2.1	Tomato	nucleus	95.21	95.21
GSMUA_Achr10P...	Banana	cytosol	67.12	67.74
VIT_14s0006g01370.t01	Wine grape	cytosol	65.3	66.05
GSMUA_Achr6P12830_001	Banana	cytosol	65.3	65.75
TraesCS4A01G201200.1	Wheat	cytosol	63.24	64.27
TraesCS4D01G102200.1	Wheat	cytosol	63.24	64.27
TraesCS5A01G107800.2	Wheat	cytosol	63.01	64.19
TraesCS4B01G105300.2	Wheat	cytosol	63.01	64.04
TraesCS5B01G111700.2	Wheat	cytosol	62.79	63.95
TraesCS5D01G122900.1	Wheat	cytosol	62.79	63.95
HORVU4Hr1G017030.1	Barley	cytosol	62.79	63.81
Os12t0190000-01	Rice	cytosol	63.24	63.24
HORVU5Hr1G031870.1	Barley	cytosol	62.33	63.19
EES16792	Sorghum	cytosol	61.19	61.61
GSMUA_Achr6P07340_001	Banana	cytosol	59.13	60.51
PGSC0003DMT400069484	Potato	cytosol	60.5	60.5
Zm00001d035337_P001	Maize	cytosol	61.19	57.76
GSMUA_Achr6P17590_001	Banana	cytosol	23.74	49.52

Protein Annotations

EMBL:JN000933	EnsemblPlants:PGSC0003DMT400078783	EnsemblPlantsGene:PGSC0003DMG400030654	EntrezGene:102593176	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	PGSC:PGSC0003DMG400030654
ProteinID:AEQ64270	ProteinID:AEQ64270.1	RefSeq:NP_001275193.1	UniParc:UPI00022FD97B	UniProt:G8FGA5	MapMan:10.3.1.5

Description

VTC2 [Source:PGSC_GENE;Acc:PGSC0003DMG400030654]

Coordinates

chr2:-:41903500..41913186

Molecular Weight (calculated)

49105.0 Da

IEP (calculated)

5.027

GRAVY (calculated)

-0.180

Length

438 amino acids

Sequence
(BLAST)

001: MLTIKRVPTL VSNYQEDVLE GNVMGCGRKC LGKCCMPVSV LPLYAFKNDD NEPIENDIQT LPEEECQMSF LNNLLLGLWE ERMSQGLFRY DVTTCETKVI
101: PGRCGFIAQL NEGRHLKKRP TEFCIDKVLQ PFDENKFNFT KVGQEEVLFR FEPSTDYKPH YFSGMRVNGG ISPSIVAINV SPIEYGHVLL IPRVLDCLPQ
201: RIDRDSFAIA LHFAREVADP FFRVGYNSLG AFATINHLHF QAYYLSVPFP VEKAPIQKIL ARKGLGGAGV IVSKLLNYPV RGFAFEGGNG STARDLSDAV
301: VNSCISLQNK NIPFNILIAQ CGKKIFLLPQ CYAEKQALGV VDQELLDTQV NPAVWEISGH IVLKRTKDYN DASEEYAWKL LSEVSLSEER FEEVKGYISE
401: ADGLQAEEDK NINPEKEIPD SPGPQVASHM PPDCLVLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.