Factsheet for Os12t0190000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0186200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	Os01t0186200-01	AT2G02710.1	17982713
AT4G26850.1	Os01t0186200-01	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G122900.1	Wheat	cytosol	83.56	85.12
TraesCS5B01G111700.2	Wheat	cytosol	83.56	85.12
TraesCS5A01G107800.2	Wheat	cytosol	82.88	84.42
HORVU5Hr1G031870.1	Barley	cytosol	80.82	81.94
EES16792	Sorghum	cytosol	80.82	81.38
CDY06609	Canola	cytosol	14.16	79.49
Zm00001d035337_P001	Maize	cytosol	80.37	75.86
GSMUA_Achr10P...	Banana	cytosol	71.69	72.35
GSMUA_Achr6P12830_001	Banana	cytosol	70.32	70.8
KRH46222	Soybean	cytosol	63.24	69.25
KRH14364	Soybean	cytosol	65.98	66.28
KRH73776	Soybean	cytosol	66.21	66.06
VIT_14s0006g01370.t01	Wine grape	cytosol	65.3	66.05
KRG98713	Soybean	cytosol	65.53	65.98
PGSC0003DMT400069484	Potato	cytosol	65.75	65.75
Solyc06g073320.2.1	Tomato	cytosol	65.3	65.45
GSMUA_Achr6P07340_001	Banana	cytosol	63.7	65.19
CDY29254	Canola	cytosol	64.38	65.13
CDX97369	Canola	cytosol	64.16	65.05
CDY46677	Canola	cytosol	58.9	64.82
Bra019082.1-P	Field mustard	cytosol	58.45	64.81
CDX92792	Canola	cytosol	58.9	64.66
CDX89298	Canola	cytosol	63.93	64.52
Bra026398.1-P	Field mustard	cytosol	63.93	64.52
CDY14296	Canola	cytosol	64.84	64.4
Bra010424.1-P	Field mustard	cytosol	64.61	64.17
AT5G55120.1	Thale cress	cytosol	63.01	64.04
PGSC0003DMT400078783	Potato	cytosol	63.24	63.24
AT4G26850.1	Thale cress	cytosol	63.47	62.9
VIT_19s0090g01000.t01	Wine grape	cytosol	64.61	62.61
Solyc02g091510.2.1	Tomato	nucleus	62.56	62.56
CDY06608	Canola	cytosol	24.2	57.61
GSMUA_Achr6P17590_001	Banana	cytosol	25.8	53.81
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	60.27	45.75
Bra035554.1-P	Field mustard	extracellular	61.64	45.61
Os01t0901300-01	Rice	cytosol	13.47	40.14
Os12t0612100-01	Rice	cytosol	26.26	31.25

Protein Annotations

MapMan:10.3.1.5	EntrezGene:4351698	ProteinID:ABA96028.1	ProteinID:BAF29357.1	ProteinID:BAT16198.1	InterPro:GDPGP
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0080048
EnsemblPlantsGene:Os12g0190000	EnsemblPlants:Os12t0190000-01	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	UniProt:Q2QWM9	UniParc:UPI00006818DC
RefSeq:XP_015619890.1	SEG:seg	:	:	:	:

Description

GDP-L-galactose phosphorylaseSimilar to VTC2. (Os12t0190000-01);Similar to VTC2. (Os12t0190000-02)

Coordinates

chr12:-:4533049..4537221

Molecular Weight (calculated)

48518.6 Da

IEP (calculated)

4.596

GRAVY (calculated)

-0.128

Length

438 amino acids

Sequence
(BLAST)

001: MEMKLTIKRV PTVVSNYQED AAATAGERPR AGCGRDCLGD CCLPDSKLPL YAFKASPKKP SSQEDASNDE FFVNLLLGLW EDRMARGLFR YDVTACETKV
101: IPGNLGFVAQ LNEGRHLKKR PTEFRVDRVL QPFDAAKFNF TKVGQEEVLF QFENGGGDDS FFVESSPISV ADRAPNVVAI NVSPIEYGHV LLIPRVLDRL
201: PQRIDQESFL LALHMAAEAA SPYFRLGYNS LGAFATINHL HFQAYYLTVP FPVEKAATKR IFLAEGTMNS GVKVSKLMNY PVRGLVFEGG NSLSDLANVV
301: SSACIWLQDN NVPYNVLISD CGKKIFLFPQ CYAEKQALGE VSQELLDTQV NPAVWEISGH IVLKRRSDYE EASEASAWRL LAEVSLSEER FEEVKAYIFD
401: AAGLVQSDEE EVSEDEDATY TPVSIAPPAV AEGCLVLQ

Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)

001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N

Arabidopsis Description

VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.