Factsheet for VIT_19s0090g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	VIT_01s0026g01590.t01	AT2G02710.1	17982713
AT4G26850.1	VIT_01s0026g01590.t01	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06609	Canola	cytosol	13.94	80.77
KRG98713	Soybean	cytosol	73.23	76.09
KRH46222	Soybean	cytosol	67.04	75.75
KRH14364	Soybean	cytosol	72.35	75.0
KRH73776	Soybean	cytosol	71.68	73.8
Solyc06g073320.2.1	Tomato	cytosol	69.03	71.4
PGSC0003DMT400069484	Potato	cytosol	69.03	71.23
CDX89298	Canola	cytosol	68.36	71.2
Bra026398.1-P	Field mustard	cytosol	68.36	71.2
CDY29254	Canola	cytosol	67.92	70.9
CDX97369	Canola	cytosol	67.26	70.37
CDX92792	Canola	cytosol	61.95	70.18
AT5G55120.1	Thale cress	cytosol	66.81	70.07
Bra019082.1-P	Field mustard	cytosol	61.06	69.87
CDY46677	Canola	cytosol	61.5	69.85
AT4G26850.1	Thale cress	cytosol	67.48	69.0
Bra010424.1-P	Field mustard	cytosol	67.26	68.93
CDY14296	Canola	cytosol	67.04	68.71
GSMUA_Achr10P...	Banana	cytosol	63.94	66.59
GSMUA_Achr6P12830_001	Banana	cytosol	63.72	66.21
TraesCS4A01G201200.1	Wheat	cytosol	62.17	65.2
TraesCS4D01G102200.1	Wheat	cytosol	61.95	64.97
TraesCS5A01G107800.2	Wheat	cytosol	61.73	64.88
HORVU4Hr1G017030.1	Barley	cytosol	61.73	64.73
TraesCS4B01G105300.2	Wheat	cytosol	61.73	64.73
TraesCS5D01G122900.1	Wheat	cytosol	61.5	64.65
Os12t0190000-01	Rice	cytosol	62.61	64.61
TraesCS5B01G111700.2	Wheat	cytosol	61.28	64.42
EES16792	Sorghum	cytosol	61.73	64.14
VIT_14s0006g01370.t01	Wine grape	cytosol	61.06	63.74
HORVU5Hr1G031870.1	Barley	cytosol	60.84	63.66
GSMUA_Achr6P07340_001	Banana	cytosol	57.08	60.28
Zm00001d035337_P001	Maize	cytosol	61.28	59.7
CDY06608	Canola	cytosol	23.89	58.7
GSMUA_Achr6P17590_001	Banana	cytosol	23.01	49.52
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	60.62	47.49
Bra035554.1-P	Field mustard	extracellular	61.95	47.3
VIT_10s0003g05000.t01	Wine grape	cytosol	27.21	32.8

Protein Annotations

MapMan:10.3.1.5	EntrezGene:100253859	wikigene:100253859	ProteinID:CCB50686	ProteinID:CCB50686.1	UniProt:F6HES4
EMBL:FN595751	InterPro:GDPGP	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0080048	EntrezGene:LOC100253859	wikigene:LOC100253859	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11
TIGR:TC61772	UniParc:UPI00015C77E5	ArrayExpress:VIT_19s0090g01000	EnsemblPlantsGene:VIT_19s0090g01000	EnsemblPlants:VIT_19s0090g01000.t01	RefSeq:XP_002278339
RefSeq:XP_002278339.1	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7105576..7108433

Molecular Weight (calculated)

50487.8 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.313

Length

452 amino acids

Sequence
(BLAST)

001: MNTLRIKRVP TVVSNYQKED SDDGARQVGG CGRNCLKQCC IQGAKLPLYA YKKVKDVVNE KASSGDENKE QPVPFLDSLV LGEWEDRMQK GLFRYDVTAC
101: ETKVIPGEYG FIAQLNEGRH LKKRPTEFRV DKVLQPFDGN KFNFTKVGQE EVLFQFEPSN DEEPEFIPNA PIDVENSTSV VAINVSPIEY GHVLLIPRIF
201: ECLPQRIDRE SFLLALDMAV EAGNPYFRLG YNSLGAFATI NHLHFQAYYL ATPFPIEKAP TRKITTAGNG VKIFELLKYP VRGLVFEGGD TLQDLANTVA
301: DSCICLQDNN IPFNVLIADA GKRIFLFAQC YAEKQALGEV NQELLDTQVN PAVWEVSGHI VLKRKEDYEG ASEQNAWRLL AEVSLSEERF QEVNALIFEA
401: IACGDDEKGN LTEDMIEEPD VTPPSHEDAG AINNSSYPAA MVAGKQECLV QQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.