Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 21798944 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46677 | Canola | cytosol | 93.23 | 93.47 |
| CDY06609 | Canola | cytosol | 17.29 | 88.46 |
| CDY29254 | Canola | cytosol | 82.46 | 75.98 |
| CDX89298 | Canola | cytosol | 82.46 | 75.81 |
| CDX97369 | Canola | cytosol | 80.95 | 74.77 |
| CDY14296 | Canola | cytosol | 82.21 | 74.38 |
| AT4G26850.1 | Thale cress | cytosol | 80.95 | 73.08 |
| KRH46222 | Soybean | cytosol | 68.67 | 68.5 |
| KRH14364 | Soybean | cytosol | 70.93 | 64.91 |
| KRG98713 | Soybean | cytosol | 70.68 | 64.83 |
| Solyc06g073320.2.1 | Tomato | cytosol | 70.93 | 64.76 |
| KRH73776 | Soybean | cytosol | 70.93 | 64.46 |
| PGSC0003DMT400069484 | Potato | cytosol | 70.68 | 64.38 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 70.18 | 61.95 |
| GSMUA_Achr10P... | Banana | cytosol | 67.17 | 61.75 |
| CDY06608 | Canola | cytosol | 28.32 | 61.41 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 64.66 | 59.31 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 63.66 | 58.93 |
| Os12t0190000-01 | Rice | cytosol | 64.66 | 58.9 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 63.41 | 58.7 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 63.16 | 58.47 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 63.16 | 58.47 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 62.91 | 58.37 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 62.66 | 58.14 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 62.41 | 57.91 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 62.41 | 57.64 |
| EES16792 | Sorghum | cytosol | 62.41 | 57.24 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 58.65 | 54.67 |
| Zm00001d035337_P001 | Maize | cytosol | 62.66 | 53.88 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 71.93 | 49.74 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 25.81 | 49.05 |
Protein Annotations
| EnsemblPlants:CDX92792 | EnsemblPlantsGene:GSBRNA2T00154617001 | GO:A0A078DV74 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | ProteinID:CDX92792 | ProteinID:CDX92792.1 |
| UniParc:UPI0004EDEAF1 | MapMan:10.3.1.5 | : | : | : | : |
Description
BnaC07g40500D
Coordinates
chrLK031873:+:840499..842467
Molecular Weight (calculated)
44768.9 Da
IEP (calculated)
6.505
GRAVY (calculated)
-0.217
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNHQKDEAS DGSVGGCGRN CLRACCVNRA RLPLYVCKKV EDSGEKAREP PVAFLESLVL GEWEDRYQRG LFRYDLTACV TKVIPGKYGF
101: IAQLNEGRHL KRPTEFRVDK VLQSFDGSKF NFTKVSQEEL LFQFEAGEDS EARFFPCMPL VAENSPSVVA INVSPIEYGH VLLIPRVLDC LPQRMDHKSM
201: LLALHMASES KNPYFRVGYN SLGAFATINH LHFQAYYLAM PFPLEKASSK EMMITTDNGV KISELLSYPM RGLLFEGGNS MQDLSDTVSD ACVCLQNNNV
301: PFNVLISDCG RRIFLMPQCY AEKQALGEVS PEVFESQVNP AVWEISGHMV LKRKEDYEGA TEEKACRLLS DASLSEERFK EVNALIFEAI GCSKPRGRA
101: IAQLNEGRHL KRPTEFRVDK VLQSFDGSKF NFTKVSQEEL LFQFEAGEDS EARFFPCMPL VAENSPSVVA INVSPIEYGH VLLIPRVLDC LPQRMDHKSM
201: LLALHMASES KNPYFRVGYN SLGAFATINH LHFQAYYLAM PFPLEKASSK EMMITTDNGV KISELLSYPM RGLLFEGGNS MQDLSDTVSD ACVCLQNNNV
301: PFNVLISDCG RRIFLMPQCY AEKQALGEVS PEVFESQVNP AVWEISGHMV LKRKEDYEGA TEEKACRLLS DASLSEERFK EVNALIFEAI GCSKPRGRA
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.