CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03044
CDY45203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	CDY03044	AT2G02710.1	17982713
AT4G26850.1	CDY45203	AT2G02710.1	17982713
AT4G26850.1	CDY03044	AT2G02710.1	21798944
AT4G26850.1	CDY45203	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026398.1-P	Field mustard	cytosol	100.0	100.0
CDY29254	Canola	cytosol	96.08	96.3
CDY06609	Canola	cytosol	17.05	94.87
CDX97369	Canola	cytosol	89.63	90.05
AT4G26850.1	Thale cress	cytosol	91.24	89.59
CDY14296	Canola	cytosol	89.4	87.98
CDX92792	Canola	cytosol	75.81	82.46
CDY46677	Canola	cytosol	74.88	81.66
KRH46222	Soybean	cytosol	67.97	73.75
KRG98713	Soybean	cytosol	71.89	71.72
KRH14364	Soybean	cytosol	70.97	70.64
KRH73776	Soybean	cytosol	70.74	69.93
PGSC0003DMT400069484	Potato	cytosol	69.59	68.95
Solyc06g073320.2.1	Tomato	cytosol	69.35	68.88
VIT_19s0090g01000.t01	Wine grape	cytosol	71.2	68.36
GSMUA_Achr10P...	Banana	cytosol	66.82	66.82
CDY06608	Canola	cytosol	27.88	65.76
TraesCS4A01G201200.1	Wheat	cytosol	63.59	64.04
Os12t0190000-01	Rice	cytosol	64.52	63.93
GSMUA_Achr6P12830_001	Banana	cytosol	64.06	63.91
TraesCS4D01G102200.1	Wheat	cytosol	63.36	63.81
TraesCS4B01G105300.2	Wheat	cytosol	63.36	63.81
HORVU4Hr1G017030.1	Barley	cytosol	63.13	63.57
TraesCS5D01G122900.1	Wheat	cytosol	62.44	63.02
EES16792	Sorghum	cytosol	62.9	62.76
TraesCS5A01G107800.2	Wheat	cytosol	61.98	62.56
TraesCS5B01G111700.2	Wheat	cytosol	61.98	62.56
HORVU5Hr1G031870.1	Barley	cytosol	61.29	61.57
GSMUA_Achr6P07340_001	Banana	cytosol	57.83	58.64
Zm00001d035337_P001	Maize	cytosol	62.67	58.62
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	69.12	51.99
GSMUA_Achr6P17590_001	Banana	cytosol	25.12	51.9

Protein Annotations

EnsemblPlants:CDX89298	EnsemblPlantsGene:GSBRNA2T00149512001	GO:A0A078DQ08	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:CDX89298	ProteinID:CDX89298.1
SEG:seg	UniParc:UPI0002344B45	MapMan:10.3.1.5	:	:	:

Description

BnaA01g15950D

Coordinates

chrLK031858:+:769261..772321

Molecular Weight (calculated)

48085.4 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.194

Length

434 amino acids

Sequence
(BLAST)

001: MLKIKRVPTV VSNYQKDESA DESVGCGRNC LGACCINGAR LPLYACKKLD KSGAGEKPVA FLESLVLGEW EDRFQRGLFR YDVTACETKV IPGKYGFVAQ
101: LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDGEV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP QRIDHKSLLL
201: ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKAPSKKM VTTASGVKIS ELLSYPVRSL LFEGGSSMQD LSDTVSDACV CLQNNNIPFN
301: ILIADCGRQI FLMPQCYAEK QALGEVSPEV LETQVNPAVW EISGHMVLKR KEDYEGASEE NAWRLLAEAS LSEERFKEVN ALIFEAIGCS YQEEELEGTV
401: VEQDNPSGSV NQKSNRTHGG PITNGTASEC LVLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.