Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G111100.2 | |
| TraesCS3B01G129800.4 | |
| TraesCS3D01G113100.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G122900.1 | Wheat | cytosol | 97.21 | 97.21 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 96.98 | 96.98 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 90.0 | 89.58 |
| Os12t0190000-01 | Rice | cytosol | 84.42 | 82.88 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 76.51 | 76.33 |
| EES16792 | Sorghum | cytosol | 77.21 | 76.32 |
| CDY06609 | Canola | cytosol | 13.72 | 75.64 |
| Zm00001d035337_P001 | Maize | cytosol | 78.37 | 72.63 |
| GSMUA_Achr10P... | Banana | cytosol | 71.86 | 71.2 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 69.07 | 68.28 |
| KRH46222 | Soybean | cytosol | 63.26 | 68.0 |
| KRG98713 | Soybean | cytosol | 66.05 | 65.29 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 64.19 | 64.49 |
| KRH14364 | Soybean | cytosol | 65.35 | 64.45 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 64.65 | 64.2 |
| PGSC0003DMT400069484 | Potato | cytosol | 65.35 | 64.16 |
| Solyc06g073320.2.1 | Tomato | cytosol | 65.12 | 64.07 |
| KRH73776 | Soybean | cytosol | 64.88 | 63.55 |
| AT5G55120.1 | Thale cress | cytosol | 63.26 | 63.11 |
| CDY46677 | Canola | cytosol | 58.37 | 63.07 |
| Bra019082.1-P | Field mustard | cytosol | 57.91 | 63.04 |
| PGSC0003DMT400078783 | Potato | cytosol | 64.19 | 63.01 |
| CDX97369 | Canola | cytosol | 63.02 | 62.73 |
| CDX92792 | Canola | cytosol | 58.14 | 62.66 |
| CDY29254 | Canola | cytosol | 62.79 | 62.36 |
| Solyc02g091510.2.1 | Tomato | nucleus | 63.49 | 62.33 |
| CDY14296 | Canola | cytosol | 63.72 | 62.13 |
| CDX89298 | Canola | cytosol | 62.56 | 61.98 |
| Bra026398.1-P | Field mustard | cytosol | 62.56 | 61.98 |
| Bra010424.1-P | Field mustard | cytosol | 63.49 | 61.9 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 64.88 | 61.73 |
| AT4G26850.1 | Thale cress | cytosol | 62.56 | 60.86 |
| CDY06608 | Canola | cytosol | 23.95 | 55.98 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 25.81 | 52.86 |
| TraesCS3A01G394400.1 | Wheat | plastid | 44.88 | 48.61 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 59.07 | 44.02 |
| Bra035554.1-P | Field mustard | extracellular | 60.47 | 43.92 |
| TraesCS5A01G046100.2 | Wheat | cytosol | 25.35 | 29.54 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G107800.2 | EnsemblPlantsGene:TraesCS5A01G107800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0080048 |
| InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | MapMan:10.3.1.5 | : | : |
Description
No Description!
Coordinates
chr5A:+:188991722..188995110
Molecular Weight (calculated)
47692.9 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.067
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTIKRVPT VVSNYQEDAG ERPRGGCGRN CLGHCCLPVS ELPVYAFKAN PTKLPLQEDA VPTDFFINLL LGQWEDRMTQ GLFRYDVTAC ETKVIPGNLG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EVLFQFENSG SDDSYFLRSA AVTVADRAPN VVAINVSPIE YGHVLLIPRV LDHVPQRIDQ
201: ESFLLALHMA AEAASPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEEGNTLNDL ANVVSSACIW
301: LQDNNVPCNV LISDSGRKIF LFPQCYAEKQ ALGEVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAEVSL SEARFEEVKA YIFDAACLVQ
401: SQAEEETDEA IYAPVLVGPS AVGEGCLVIP
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EVLFQFENSG SDDSYFLRSA AVTVADRAPN VVAINVSPIE YGHVLLIPRV LDHVPQRIDQ
201: ESFLLALHMA AEAASPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEEGNTLNDL ANVVSSACIW
301: LQDNNVPCNV LISDSGRKIF LFPQCYAEKQ ALGEVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAEVSL SEARFEEVKA YIFDAACLVQ
401: SQAEEETDEA IYAPVLVGPS AVGEGCLVIP
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.