CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31655

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	KXG31655	AT2G02710.1	17982713
AT4G26850.1	KXG31655	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035337_P001	Maize	cytosol	90.8	85.13
Os12t0190000-01	Rice	cytosol	81.38	80.82
HORVU5Hr1G031870.1	Barley	cytosol	77.24	77.78
TraesCS5D01G122900.1	Wheat	cytosol	76.78	77.67
TraesCS5B01G111700.2	Wheat	cytosol	76.78	77.67
TraesCS5A01G107800.2	Wheat	cytosol	76.32	77.21
CDY06609	Canola	cytosol	13.79	76.92
GSMUA_Achr10P...	Banana	cytosol	69.89	70.05
GSMUA_Achr6P12830_001	Banana	cytosol	69.89	69.89
KRH46222	Soybean	cytosol	61.61	67.0
GSMUA_Achr6P07340_001	Banana	cytosol	63.91	64.95
KRH14364	Soybean	cytosol	65.06	64.91
PGSC0003DMT400069484	Potato	cytosol	65.06	64.61
KRG98713	Soybean	cytosol	64.37	64.37
VIT_14s0006g01370.t01	Wine grape	cytosol	63.68	63.97
CDX97369	Canola	cytosol	63.45	63.89
Solyc06g073320.2.1	Tomato	cytosol	64.14	63.84
KRH73776	Soybean	cytosol	64.37	63.78
AT5G55120.1	Thale cress	cytosol	62.99	63.57
CDY29254	Canola	cytosol	62.76	63.05
Bra019082.1-P	Field mustard	cytosol	57.24	63.04
Bra026398.1-P	Field mustard	cytosol	62.76	62.9
CDX89298	Canola	cytosol	62.76	62.9
CDY46677	Canola	cytosol	57.47	62.81
CDY14296	Canola	cytosol	63.45	62.59
CDX92792	Canola	cytosol	57.24	62.41
Bra010424.1-P	Field mustard	cytosol	63.22	62.36
VIT_19s0090g01000.t01	Wine grape	cytosol	64.14	61.73
AT4G26850.1	Thale cress	cytosol	62.3	61.31
Solyc02g091510.2.1	Tomato	nucleus	61.61	61.19
PGSC0003DMT400078783	Potato	cytosol	61.61	61.19
CDY06608	Canola	cytosol	24.83	58.7
GSMUA_Achr6P17590_001	Banana	cytosol	25.29	52.38
KXG33927	Sorghum	plastid	42.76	47.81
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	59.08	44.54
Bra035554.1-P	Field mustard	extracellular	60.46	44.43
KXG23983	Sorghum	cytosol	25.29	29.89

Protein Annotations

MapMan:10.3.1.5	EntrezGene:8084736	UniProt:C5YTA2	EnsemblPlants:EES16792	ProteinID:EES16792	ProteinID:EES16792.1
InterPro:GDPGP	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0080048	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	EnsemblPlantsGene:SORBI_3008G064700	unigene:Sbi.3771	UniParc:UPI0001A88036
RefSeq:XP_002442954.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:7102957..7108389

Molecular Weight (calculated)

48275.7 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.132

Length

435 amino acids

Sequence
(BLAST)

001: MEMKLTIKRV PTVVSNYQDD ADKPRAGCGR NCLGDCCLPA SKLPLYAFKL NPAKRSQEGA ASTKLLVDIL LSEWEDRMAR GLFRYDVTAC ETKVIPGNLG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDPA KFNFTKVGQE EVLFQFENGD GDDSYFLNDA PIIAVDRAPN VVAINVSPIE YGHVLLIPRV LDRLPQKIDP
201: ESFLLALQMA AEAASPYFRL GYNSLGAFAT INHLHFQAYY LSVPFPVEKA ATLKIPLSED TMKNGVTVSK LINYPVRGLV FEGGNTLEDL ANVVSNACIW
301: LQDNNVPYNV LISDCGKRVF LFPQCYAEKQ ALGEVSQELL DTQVNPAVWE ISGHIVLKRR SDYEEASETS AWKLLAEVSL SEERFEEVKA YIFSAAGLVL
401: SDEEEEEASE GKGTTTFAPV PVSPMPVAEG CLVHQ

Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)

001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N

Arabidopsis Description

VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.