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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G020100.9

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G122900.1 Wheat cytosol 89.81 90.23
TraesCS5B01G111700.2 Wheat cytosol 89.58 90.0
TraesCS5A01G107800.2 Wheat cytosol 89.58 90.0
Os12t0190000-01 Rice cytosol 81.94 80.82
EES16792 Sorghum cytosol 77.78 77.24
CDY06609 Canola cytosol 13.43 74.36
HORVU4Hr1G017030.1 Barley cytosol 74.07 74.25
Zm00001d035337_P001 Maize cytosol 77.55 72.2
GSMUA_Achr10P... Banana cytosol 70.6 70.28
KRH46222 Soybean cytosol 62.96 68.0
GSMUA_Achr6P12830_001 Banana cytosol 68.29 67.82
KRG98713 Soybean cytosol 65.97 65.52
PGSC0003DMT400069484 Potato cytosol 66.2 65.3
Solyc06g073320.2.1 Tomato cytosol 65.28 64.53
KRH14364 Soybean cytosol 65.05 64.45
KRH73776 Soybean cytosol 64.58 63.55
VIT_14s0006g01370.t01 Wine grape cytosol 63.66 63.51
GSMUA_Achr6P07340_001 Banana cytosol 62.73 63.32
CDY46677 Canola cytosol 57.87 62.81
Bra019082.1-P Field mustard cytosol 57.41 62.78
CDX97369 Canola cytosol 62.73 62.73
CDX92792 Canola cytosol 57.64 62.41
PGSC0003DMT400078783 Potato cytosol 63.19 62.33
CDY14296 Canola cytosol 63.43 62.13
AT5G55120.1 Thale cress cytosol 61.81 61.95
Bra010424.1-P Field mustard cytosol 63.19 61.9
Solyc02g091510.2.1 Tomato nucleus 62.5 61.64
CDY29254 Canola cytosol 61.57 61.43
CDX89298 Canola cytosol 61.57 61.29
Bra026398.1-P Field mustard cytosol 61.57 61.29
AT4G26850.1 Thale cress cytosol 62.27 60.86
VIT_19s0090g01000.t01 Wine grape cytosol 63.66 60.84
HORVU6Hr1G054830.1 Barley cytosol 14.35 59.05
CDY06608 Canola cytosol 23.84 55.98
GSMUA_Achr6P17590_001 Banana cytosol 25.46 52.38
HORVU5Hr1G075160.1 Barley plastid 35.65 49.52
HORVU3Hr1G089030.13 Barley plastid 44.68 46.62
HORVU5Hr1G100430.1 Barley mitochondrion 28.01 45.83
HORVU6Hr1G083130.2 Barley extracellular 25.0 45.19
Bra035554.1-P Field mustard extracellular 59.03 43.07
CDY20787 Canola endoplasmic reticulum, extracellular, vacuole 57.18 42.81
HORVU5Hr1G011170.1 Barley cytosol 25.23 29.54
Protein Annotations
EMBL:AK355342EnsemblPlants:HORVU5Hr1G031870.1EnsemblPlantsGene:HORVU5Hr1G031870GO:GO:0003674GO:GO:0003824GO:GO:0016740
GO:GO:0080048InterPro:GDPGPPANTHER:PTHR20884PANTHER:PTHR20884:SF11UniParc:UPI00020048C3UniProt:F2CUP0
MapMan:10.3.1.5:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CUP0]
Coordinates
chrchr5H:-:203731880..203735903
Molecular Weight (calculated)
48022.5 Da
IEP (calculated)
4.975
GRAVY (calculated)
-0.047
Length
432 amino acids
Sequence
(BLAST)
001: MLDMKLTIKR VPTVVSNYQE DAGEQPRGGC GRNCLGHCCL PVSELPVYAF KANSTKLPLQ KDAVPTDFFI NLLLGQWEDR MTQGLFRYDV TACETKVIPG
101: NLGFVAQLNE GRHLKKRPTE FRVDNVLQPF DSSKFNFTKV GQEEVLFKFE NSGTDDSYFL RSAAITVVDR APNVVAINVS PIEYGHVLLI PRVLDHLSQM
201: IDQESFLLAL HMAAEAASPY FRLGYNSLGA FATINHLHFQ AYYLTVPFPV EKAATQRISL PEGGMKSGVK VSKLMNYPVR GLVFEEGNTL NDLANVVSSA
301: CIWLQDNNVP YNVLISDSGR KIFLFPQCYA EKQALGEVSQ ELLDTQVNPA VWEISGHIVL KRRDDYEEAS EASAWRLLAE VSLSEARFEE VKAYIFDATG
401: LVQLQVEETN GIIYAPVPVS PSAVAEGCLV LP
Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.