Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU3Hr1G020100.9 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G26850.1 | HORVU3Hr1G020100.9 | AT2G02710.1 | 17982713 |
AT4G26850.1 | HORVU3Hr1G020100.9 | AT2G02710.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G122900.1 | Wheat | cytosol | 89.81 | 90.23 |
TraesCS5B01G111700.2 | Wheat | cytosol | 89.58 | 90.0 |
TraesCS5A01G107800.2 | Wheat | cytosol | 89.58 | 90.0 |
Os12t0190000-01 | Rice | cytosol | 81.94 | 80.82 |
EES16792 | Sorghum | cytosol | 77.78 | 77.24 |
CDY06609 | Canola | cytosol | 13.43 | 74.36 |
HORVU4Hr1G017030.1 | Barley | cytosol | 74.07 | 74.25 |
Zm00001d035337_P001 | Maize | cytosol | 77.55 | 72.2 |
GSMUA_Achr10P... | Banana | cytosol | 70.6 | 70.28 |
KRH46222 | Soybean | cytosol | 62.96 | 68.0 |
GSMUA_Achr6P12830_001 | Banana | cytosol | 68.29 | 67.82 |
KRG98713 | Soybean | cytosol | 65.97 | 65.52 |
PGSC0003DMT400069484 | Potato | cytosol | 66.2 | 65.3 |
Solyc06g073320.2.1 | Tomato | cytosol | 65.28 | 64.53 |
KRH14364 | Soybean | cytosol | 65.05 | 64.45 |
KRH73776 | Soybean | cytosol | 64.58 | 63.55 |
VIT_14s0006g01370.t01 | Wine grape | cytosol | 63.66 | 63.51 |
GSMUA_Achr6P07340_001 | Banana | cytosol | 62.73 | 63.32 |
CDY46677 | Canola | cytosol | 57.87 | 62.81 |
Bra019082.1-P | Field mustard | cytosol | 57.41 | 62.78 |
CDX97369 | Canola | cytosol | 62.73 | 62.73 |
CDX92792 | Canola | cytosol | 57.64 | 62.41 |
PGSC0003DMT400078783 | Potato | cytosol | 63.19 | 62.33 |
CDY14296 | Canola | cytosol | 63.43 | 62.13 |
AT5G55120.1 | Thale cress | cytosol | 61.81 | 61.95 |
Bra010424.1-P | Field mustard | cytosol | 63.19 | 61.9 |
Solyc02g091510.2.1 | Tomato | nucleus | 62.5 | 61.64 |
CDY29254 | Canola | cytosol | 61.57 | 61.43 |
CDX89298 | Canola | cytosol | 61.57 | 61.29 |
Bra026398.1-P | Field mustard | cytosol | 61.57 | 61.29 |
AT4G26850.1 | Thale cress | cytosol | 62.27 | 60.86 |
VIT_19s0090g01000.t01 | Wine grape | cytosol | 63.66 | 60.84 |
HORVU6Hr1G054830.1 | Barley | cytosol | 14.35 | 59.05 |
CDY06608 | Canola | cytosol | 23.84 | 55.98 |
GSMUA_Achr6P17590_001 | Banana | cytosol | 25.46 | 52.38 |
HORVU5Hr1G075160.1 | Barley | plastid | 35.65 | 49.52 |
HORVU3Hr1G089030.13 | Barley | plastid | 44.68 | 46.62 |
HORVU5Hr1G100430.1 | Barley | mitochondrion | 28.01 | 45.83 |
HORVU6Hr1G083130.2 | Barley | extracellular | 25.0 | 45.19 |
Bra035554.1-P | Field mustard | extracellular | 59.03 | 43.07 |
CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.18 | 42.81 |
HORVU5Hr1G011170.1 | Barley | cytosol | 25.23 | 29.54 |
Protein Annotations
EMBL:AK355342 | EnsemblPlants:HORVU5Hr1G031870.1 | EnsemblPlantsGene:HORVU5Hr1G031870 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | UniParc:UPI00020048C3 | UniProt:F2CUP0 |
MapMan:10.3.1.5 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CUP0]
Coordinates
chrchr5H:-:203731880..203735903
Molecular Weight (calculated)
48022.5 Da
IEP (calculated)
4.975
GRAVY (calculated)
-0.047
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDMKLTIKR VPTVVSNYQE DAGEQPRGGC GRNCLGHCCL PVSELPVYAF KANSTKLPLQ KDAVPTDFFI NLLLGQWEDR MTQGLFRYDV TACETKVIPG
101: NLGFVAQLNE GRHLKKRPTE FRVDNVLQPF DSSKFNFTKV GQEEVLFKFE NSGTDDSYFL RSAAITVVDR APNVVAINVS PIEYGHVLLI PRVLDHLSQM
201: IDQESFLLAL HMAAEAASPY FRLGYNSLGA FATINHLHFQ AYYLTVPFPV EKAATQRISL PEGGMKSGVK VSKLMNYPVR GLVFEEGNTL NDLANVVSSA
301: CIWLQDNNVP YNVLISDSGR KIFLFPQCYA EKQALGEVSQ ELLDTQVNPA VWEISGHIVL KRRDDYEEAS EASAWRLLAE VSLSEARFEE VKAYIFDATG
401: LVQLQVEETN GIIYAPVPVS PSAVAEGCLV LP
101: NLGFVAQLNE GRHLKKRPTE FRVDNVLQPF DSSKFNFTKV GQEEVLFKFE NSGTDDSYFL RSAAITVVDR APNVVAINVS PIEYGHVLLI PRVLDHLSQM
201: IDQESFLLAL HMAAEAASPY FRLGYNSLGA FATINHLHFQ AYYLTVPFPV EKAATQRISL PEGGMKSGVK VSKLMNYPVR GLVFEEGNTL NDLANVVSSA
301: CIWLQDNNVP YNVLISDSGR KIFLFPQCYA EKQALGEVSQ ELLDTQVNPA VWEISGHIVL KRRDDYEEAS EASAWRLLAE VSLSEARFEE VKAYIFDATG
401: LVQLQVEETN GIIYAPVPVS PSAVAEGCLV LP
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.