Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 21798944 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14296 | Canola | cytosol | 95.83 | 93.88 |
| CDY06609 | Canola | cytosol | 16.9 | 93.59 |
| CDX89298 | Canola | cytosol | 90.05 | 89.63 |
| CDY29254 | Canola | cytosol | 88.66 | 88.45 |
| AT4G26850.1 | Thale cress | cytosol | 87.04 | 85.07 |
| CDX92792 | Canola | cytosol | 74.77 | 80.95 |
| CDY46677 | Canola | cytosol | 74.54 | 80.9 |
| KRH46222 | Soybean | cytosol | 68.29 | 73.75 |
| KRG98713 | Soybean | cytosol | 72.22 | 71.72 |
| PGSC0003DMT400069484 | Potato | cytosol | 70.6 | 69.63 |
| KRH14364 | Soybean | cytosol | 70.14 | 69.5 |
| GSMUA_Achr10P... | Banana | cytosol | 69.21 | 68.89 |
| Solyc06g073320.2.1 | Tomato | cytosol | 69.68 | 68.88 |
| KRH73776 | Soybean | cytosol | 69.44 | 68.34 |
| CDY06608 | Canola | cytosol | 28.7 | 67.39 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 70.37 | 67.26 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 65.97 | 65.52 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 65.05 | 65.2 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 64.81 | 64.97 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 64.58 | 64.73 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 64.58 | 64.73 |
| Os12t0190000-01 | Rice | cytosol | 65.05 | 64.16 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 63.19 | 63.49 |
| EES16792 | Sorghum | cytosol | 63.89 | 63.45 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 62.96 | 63.26 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 62.73 | 63.02 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 62.73 | 62.73 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 59.26 | 59.81 |
| Zm00001d035337_P001 | Maize | cytosol | 63.19 | 58.84 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 25.69 | 52.86 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.29 | 51.13 |
Protein Annotations
| EnsemblPlants:CDX97369 | EnsemblPlantsGene:GSBRNA2T00104466001 | GO:A0A078E9F6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | ProteinID:CDX97369 | ProteinID:CDX97369.1 |
| SEG:seg | UniParc:UPI0004EEC8BB | MapMan:10.3.1.5 | : | : | : |
Description
BnaC08g12340D
Coordinates
chrLK031899:-:64567..66906
Molecular Weight (calculated)
47909.3 Da
IEP (calculated)
4.766
GRAVY (calculated)
-0.169
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNYQKDEAS DESVGCGRNC LGACCLNGAR LPLYACNKLE KSGTGEKPPV AFLESLVLEE WEDRFQRGLF RYDVTACETK VIPGKYGFVA
101: QLNEGRHLKK RPTEFRVDKV LQSFDGNKFN FTKVGQEELL FQFEAGEDCE AQFFPCMPVD AENSPSVVAI NVSPIEYGHV LLIPRVLDCL PQRIDHKSLL
201: LALHMAAEAA NPYFRLGYNS LGAFATINHL HFQAYYLAMP FPLEKAPSKK MITTVSGVKI SELVNYPVRS LLFEGGTSMQ DLSDTVSDAC VCLQNNNIPF
301: NILISDSGRQ IFLMPQCYAE KQALGEVSPE LLETQVNPAV WEISGHMVLK RKEDYEGASE ENAWRLLAEA SLSEERFKEV NALIFEAIGC SNQEEELEGI
401: LVQPSGSVNQ TGNRTLGGPI TNGTASECLV LQ
101: QLNEGRHLKK RPTEFRVDKV LQSFDGNKFN FTKVGQEELL FQFEAGEDCE AQFFPCMPVD AENSPSVVAI NVSPIEYGHV LLIPRVLDCL PQRIDHKSLL
201: LALHMAAEAA NPYFRLGYNS LGAFATINHL HFQAYYLAMP FPLEKAPSKK MITTVSGVKI SELVNYPVRS LLFEGGTSMQ DLSDTVSDAC VCLQNNNIPF
301: NILISDSGRQ IFLMPQCYAE KQALGEVSPE LLETQVNPAV WEISGHMVLK RKEDYEGASE ENAWRLLAEA SLSEERFKEV NALIFEAIGC SNQEEELEGI
401: LVQPSGSVNQ TGNRTLGGPI TNGTASECLV LQ
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.