Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P06380_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | GSMUA_Achr5P06380_001 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | GSMUA_Achr5P06380_001 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06609 | Canola | cytosol | 14.72 | 80.77 |
| GSMUA_Achr10P... | Banana | cytosol | 77.1 | 76.04 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 71.03 | 69.89 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 67.76 | 67.29 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 67.76 | 67.29 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 67.52 | 67.05 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 67.29 | 66.82 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 64.49 | 64.19 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 64.49 | 64.19 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 64.25 | 63.95 |
| EES16792 | Sorghum | cytosol | 64.95 | 63.91 |
| Os12t0190000-01 | Rice | cytosol | 65.19 | 63.7 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 63.32 | 62.73 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 30.37 | 61.9 |
| Solyc06g073320.2.1 | Tomato | cytosol | 62.62 | 61.33 |
| PGSC0003DMT400069484 | Potato | cytosol | 62.62 | 61.19 |
| KRH14364 | Soybean | cytosol | 62.15 | 61.01 |
| KRH46222 | Soybean | cytosol | 56.54 | 60.5 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 60.98 | 60.28 |
| Zm00001d035337_P001 | Maize | cytosol | 64.49 | 59.48 |
| CDX97369 | Canola | cytosol | 59.81 | 59.26 |
| PGSC0003DMT400078783 | Potato | cytosol | 60.51 | 59.13 |
| CDY46677 | Canola | cytosol | 54.91 | 59.05 |
| Bra019082.1-P | Field mustard | cytosol | 54.44 | 58.99 |
| KRH73776 | Soybean | cytosol | 60.28 | 58.77 |
| CDX92792 | Canola | cytosol | 54.67 | 58.65 |
| Solyc02g091510.2.1 | Tomato | nucleus | 59.81 | 58.45 |
| KRG98713 | Soybean | cytosol | 59.35 | 58.39 |
| Bra010424.1-P | Field mustard | cytosol | 59.81 | 58.05 |
| AT5G55120.1 | Thale cress | cytosol | 58.41 | 58.0 |
| CDY29254 | Canola | cytosol | 58.64 | 57.97 |
| CDX89298 | Canola | cytosol | 58.64 | 57.83 |
| Bra026398.1-P | Field mustard | cytosol | 58.64 | 57.83 |
| CDY14296 | Canola | cytosol | 59.11 | 57.37 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 60.28 | 57.08 |
| AT4G26850.1 | Thale cress | cytosol | 58.41 | 56.56 |
| CDY06608 | Canola | cytosol | 23.83 | 55.43 |
| GSMUA_Achr6P13510_001 | Banana | cytosol, endoplasmic reticulum, plastid | 48.13 | 41.96 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.84 | 41.42 |
| Bra035554.1-P | Field mustard | extracellular | 56.78 | 41.05 |
| GSMUA_Achr4P31690_001 | Banana | extracellular, vacuole | 24.3 | 28.11 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P07340_001 | EnsemblPlants:GSMUA_Achr6T07340_001 | EnsemblPlantsGene:GSMUA_Achr6G07340_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | SEG:seg | UniParc:UPI0002962872 |
| UniProt:M0T4Y3 | MapMan:10.3.1.5 | : | : | : | : |
Description
Putative UPF0580 protein C15orf58 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07340_001]
Coordinates
chr6:-:4968648..4972239
Molecular Weight (calculated)
47525.5 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.187
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFFGGTICR YLKIPASPAA ATETASASAA WPVSKLPLYA FESDARPKIS SPGDDEPPSD FFLNTLLLGQ WEDWMSRGLF RYDVMACETK VIPGEYGFVA
101: QLNEGRHLKK RPTEFRVDRV LQPFDRAKFN FTKVGQEEVL FRFEPGESGS GRLLEDDAVG DANAPNVVAI NVSPIEYGHV LLIPRVLDCL PQRIDPDSFL
201: LALHMAAEAG SPYFRLGYNS LGAFATINHL HFQAYFLSMP FPVEKNSTQR IPIVGGLSHN GVKVSRLLNY PVRGLVYEGG NTLKDLSDVV ANSCICLQEN
301: NIPFNVLISD SGRRIFLFPQ CYAEKQALGE VGQDLLDTQV NPAVWEISGH IVLKRKKDYD EASEHYAWRL LAEVSLSEAR FEEVKVYIFE ATGLVESEKE
401: KMEPGDDRGA PFQSPSPVGT ASPHLKVA
101: QLNEGRHLKK RPTEFRVDRV LQPFDRAKFN FTKVGQEEVL FRFEPGESGS GRLLEDDAVG DANAPNVVAI NVSPIEYGHV LLIPRVLDCL PQRIDPDSFL
201: LALHMAAEAG SPYFRLGYNS LGAFATINHL HFQAYFLSMP FPVEKNSTQR IPIVGGLSHN GVKVSRLLNY PVRGLVYEGG NTLKDLSDVV ANSCICLQEN
301: NIPFNVLISD SGRRIFLFPQ CYAEKQALGE VGQDLLDTQV NPAVWEISGH IVLKRKKDYD EASEHYAWRL LAEVSLSEAR FEEVKVYIFE ATGLVESEKE
401: KMEPGDDRGA PFQSPSPVGT ASPHLKVA
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.