Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23983 | Sorghum | cytosol | 43.51 | 43.75 |
| Os12t0612100-01 | Rice | cytosol | 43.24 | 43.48 |
| HORVU5Hr1G011170.1 | Barley | cytosol | 41.35 | 41.46 |
| TraesCS5D01G056000.1 | Wheat | cytosol | 41.35 | 41.46 |
| TraesCS5B01G050200.1 | Wheat | cytosol | 41.08 | 41.19 |
| TraesCS5A01G046100.2 | Wheat | cytosol | 40.81 | 40.92 |
| VIT_10s0003g05000.t01 | Wine grape | cytosol | 38.11 | 37.6 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 29.73 | 25.29 |
| GSMUA_Achr10P... | Banana | cytosol | 29.46 | 25.12 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 28.11 | 24.3 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 12.16 | 21.43 |
| GSMUA_Achr6P13510_001 | Banana | cytosol, endoplasmic reticulum, plastid | 24.59 | 18.53 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P31690_001 | EnsemblPlants:GSMUA_Achr4T31690_001 | EnsemblPlantsGene:GSMUA_Achr4G31690_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | InterPro:HIT-like_sf | InterPro:IPR036265 | ncoils:Coil | PANTHER:PTHR20884 |
| PANTHER:PTHR20884:SF9 | SUPFAM:SSF54197 | UniParc:UPI000295BD59 | UniProt:M0STT1 | MapMan:35.1 | : |
Description
VTC2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G31690_001]
Coordinates
chr4:+:28793092..28798137
Molecular Weight (calculated)
41661.6 Da
IEP (calculated)
5.588
GRAVY (calculated)
0.182
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFCLPILEI PSPLFLHTYF FLISGIITNV YQLGIPTKTD GACGGLPCSE EGRHSLLDIV LLSQWEDHAW KGHLRYDVSS CQMKVITGGK KFIAQLNENW
101: RSNILMDLEK KIFQSLSPIR SSYMKTHRED VLFCVSCGEK EGSELVYSTV LPKDGILIIA NANPVEYGHI FLVPYDVHQM PQFLDKRVLG LMSQITAEVA
201: NRSFHIFFDY DASRSLDHKC FQACYFADPL PVELLPTTAI YGNLLTTGLY IGEVADYPLK AVVFVSKNLK ALVEIVGEMC SYLRDNGTAF SLLISDCGTR
301: IFLFPQVYTL LGYRLSTWEC GGYFVYDAKS DFNDVTEVDI SKLLASVSLD VYNFKNLMQQ CCNAAVKLIL
101: RSNILMDLEK KIFQSLSPIR SSYMKTHRED VLFCVSCGEK EGSELVYSTV LPKDGILIIA NANPVEYGHI FLVPYDVHQM PQFLDKRVLG LMSQITAEVA
201: NRSFHIFFDY DASRSLDHKC FQACYFADPL PVELLPTTAI YGNLLTTGLY IGEVADYPLK AVVFVSKNLK ALVEIVGEMC SYLRDNGTAF SLLISDCGTR
301: IFLFPQVYTL LGYRLSTWEC GGYFVYDAKS DFNDVTEVDI SKLLASVSLD VYNFKNLMQQ CCNAAVKLIL
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.