Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P06380_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | GSMUA_Achr5P06380_001 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | GSMUA_Achr5P06380_001 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 64.76 | 31.34 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 61.9 | 30.37 |
| CDY06609 | Canola | cytosol | 10.48 | 28.21 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 56.67 | 27.61 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 56.67 | 27.61 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 56.67 | 27.61 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 57.14 | 27.59 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 55.71 | 27.15 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 53.81 | 26.28 |
| CDY46677 | Canola | cytosol | 49.52 | 26.13 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 53.33 | 26.05 |
| Bra019082.1-P | Field mustard | cytosol | 48.57 | 25.82 |
| CDX92792 | Canola | cytosol | 49.05 | 25.81 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 52.86 | 25.81 |
| Os12t0190000-01 | Rice | cytosol | 53.81 | 25.8 |
| KRH46222 | Soybean | cytosol | 49.05 | 25.75 |
| CDX97369 | Canola | cytosol | 52.86 | 25.69 |
| Solyc06g073320.2.1 | Tomato | cytosol | 53.33 | 25.63 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 52.38 | 25.46 |
| PGSC0003DMT400069484 | Potato | cytosol | 52.86 | 25.34 |
| EES16792 | Sorghum | cytosol | 52.38 | 25.29 |
| CDY29254 | Canola | cytosol | 51.9 | 25.17 |
| CDX89298 | Canola | cytosol | 51.9 | 25.12 |
| Bra026398.1-P | Field mustard | cytosol | 51.9 | 25.12 |
| CDY14296 | Canola | cytosol | 52.38 | 24.94 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 51.43 | 24.94 |
| KRH14364 | Soybean | cytosol | 51.43 | 24.77 |
| Bra010424.1-P | Field mustard | cytosol | 51.9 | 24.72 |
| AT4G26850.1 | Thale cress | cytosol | 51.43 | 24.43 |
| AT5G55120.1 | Thale cress | cytosol | 49.52 | 24.13 |
| KRH73776 | Soybean | cytosol | 50.0 | 23.92 |
| KRG98713 | Soybean | cytosol | 49.52 | 23.91 |
| Solyc02g091510.2.1 | Tomato | nucleus | 49.52 | 23.74 |
| PGSC0003DMT400078783 | Potato | cytosol | 49.52 | 23.74 |
| Zm00001d035337_P001 | Maize | cytosol | 51.9 | 23.49 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 49.52 | 23.01 |
| Bra035554.1-P | Field mustard | extracellular | 49.05 | 17.4 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.14 | 17.16 |
| GSMUA_Achr6P13510_001 | Banana | cytosol, endoplasmic reticulum, plastid | 39.52 | 16.9 |
| GSMUA_Achr4P31690_001 | Banana | extracellular, vacuole | 21.43 | 12.16 |
| CDY06608 | Canola | cytosol | 8.1 | 9.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P17590_001 | EnsemblPlants:GSMUA_Achr6T17590_001 | EnsemblPlantsGene:GSMUA_Achr6G17590_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | UniParc:UPI000295BDAD | UniProt:M0T7V7 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G17590_001]
Coordinates
chr6:+:11850385..11851857
Molecular Weight (calculated)
24012.8 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.374
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MIWPRYSTLE NQNKLTEISP KVSPPGVDEP PSDFFLKTLL QGQDRMSRGL FRYDVTACET WVIAGEYGFM AQLNEGRHLK KRPTEFRVDL LLRPLDPTKL
101: NFTKVGQEEI LFRFEAGEGD KARSLSMCFC CHFEAGHVLD CLPQRIDPDS FLLALHMAAE AARPLLQARL RDLPWRGFQF AEASSVPEQS EAKRKSLSEA
201: RFEEVKASIF
101: NFTKVGQEEI LFRFEAGEGD KARSLSMCFC CHFEAGHVLD CLPQRIDPDS FLLALHMAAE AARPLLQARL RDLPWRGFQF AEASSVPEQS EAKRKSLSEA
201: RFEEVKASIF
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.