CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07406
KRH58039
KRH69365
KRH74769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	KRH07406	AT2G02710.1	17982713
AT4G26850.1	KRH58039	AT2G02710.1	17982713
AT4G26850.1	KRH69365	AT2G02710.1	17982713
AT4G26850.1	KRH74769	AT2G02710.1	17982713
AT4G26850.1	KRH07406	AT2G02710.1	21798944
AT4G26850.1	KRH58039	AT2G02710.1	21798944
AT4G26850.1	KRH69365	AT2G02710.1	21798944
AT4G26850.1	KRH74769	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73776	Soybean	cytosol	90.83	90.2
CDY06609	Canola	cytosol	14.45	80.77
KRH46222	Soybean	cytosol	72.48	79.0
KRG98713	Soybean	cytosol	76.83	77.01
VIT_19s0090g01000.t01	Wine grape	cytosol	75.0	72.35
Solyc06g073320.2.1	Tomato	cytosol	71.56	71.4
PGSC0003DMT400069484	Potato	cytosol	71.33	71.0
Bra026398.1-P	Field mustard	cytosol	70.64	70.97
CDX89298	Canola	cytosol	70.64	70.97
CDX92792	Canola	cytosol	64.91	70.93
CDY29254	Canola	cytosol	70.41	70.9
Bra019082.1-P	Field mustard	cytosol	64.22	70.89
CDY46677	Canola	cytosol	64.68	70.85
CDX97369	Canola	cytosol	69.5	70.14
CDY14296	Canola	cytosol	70.41	69.61
AT5G55120.1	Thale cress	cytosol	68.81	69.61
AT4G26850.1	Thale cress	cytosol	70.41	69.46
Bra010424.1-P	Field mustard	cytosol	69.95	69.16
GSMUA_Achr10P...	Banana	cytosol	66.97	67.28
TraesCS4A01G201200.1	Wheat	cytosol	65.83	66.59
TraesCS4D01G102200.1	Wheat	cytosol	65.83	66.59
GSMUA_Achr6P12830_001	Banana	cytosol	66.28	66.44
TraesCS4B01G105300.2	Wheat	cytosol	65.6	66.36
Os12t0190000-01	Rice	cytosol	66.28	65.98
HORVU4Hr1G017030.1	Barley	cytosol	64.68	65.43
TraesCS5A01G107800.2	Wheat	cytosol	64.45	65.35
EES16792	Sorghum	cytosol	64.91	65.06
HORVU5Hr1G031870.1	Barley	cytosol	64.45	65.05
TraesCS5B01G111700.2	Wheat	cytosol	63.99	64.88
TraesCS5D01G122900.1	Wheat	cytosol	63.76	64.65
GSMUA_Achr6P07340_001	Banana	cytosol	61.01	62.15
Zm00001d035337_P001	Maize	cytosol	65.14	61.21
CDY06608	Canola	cytosol	25.46	60.33
GSMUA_Achr6P17590_001	Banana	cytosol	24.77	51.43
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	63.3	47.83
Bra035554.1-P	Field mustard	extracellular	64.91	47.8

Protein Annotations

MapMan:10.3.1.5	EntrezGene:100806541	EMBL:ACUP02008500	UniProt:G3E7M6	InterPro:GDPGP	EnsemblPlantsGene:GLYMA_14G021800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0080048
EMBL:HQ636607	EnsemblPlants:KRH14364	ProteinID:KRH14364	ProteinID:KRH14364.1	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11
UniParc:UPI00022A3BFB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:1548013..1550928

Molecular Weight (calculated)

48609.1 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.133

Length

436 amino acids

Sequence
(BLAST)

001: MMLRIKRVPT VVSNYQKDDA ADSPRPVGGC GRNCLKACCL PDAKLPLYAF KKANGKDLAL HACAGEPPLT FLDSLLLGEW EDRMQRGLFR YDVTACETKV
101: IPGEYGFVAQ LNEGRHLKKR PTEFRVDKVL QPFDENKFNF TKVGQEEVLF QFEASEDGQV QFFPNAPVDV DNSPSFVAIN VSPIEYGHVL LIPRIFECLP
201: QRIDRESFLL ALHMAVEADN PYFRLGYNSL GAFATINHLH FQAYYLALPF PIEKAPTKKI ASLNGGVKIS ELLKYPVRGL VFEGGDTLED LSNVVSDACI
301: CLQNNNIPFN VLISDCGKQV YLLPQCYAEK QALGEVDAEL LDTQVNPAVW EISGHMVLKR KKDYDEASEG NAWRLLAEVS LSQERFQEVN DLIFEAIGCG
401: ELEDVNVESV KEVDAVSTSE HPTVVVAGSQ ECVILH

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.