CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06609	Canola	cytosol	13.0	96.15
Bra035554.1-P	Field mustard	extracellular	85.27	83.11
CDY06608	Canola	cytosol	24.78	77.72
AT5G55120.1	Thale cress	cytosol	56.15	75.17
CDX92792	Canola	cytosol	49.74	71.93
CDY46677	Canola	cytosol	48.53	70.35
CDY29254	Canola	cytosol	52.17	69.52
CDX89298	Canola	cytosol	51.99	69.12
CDX97369	Canola	cytosol	51.13	68.29
KRH46222	Soybean	cytosol	46.62	67.25
CDY14296	Canola	cytosol	51.3	67.12
Solyc06g073320.2.1	Tomato	cytosol	48.53	64.07
PGSC0003DMT400069484	Potato	cytosol	48.35	63.7
KRG98713	Soybean	cytosol	47.83	63.45
KRH14364	Soybean	cytosol	47.83	63.3
KRH73776	Soybean	cytosol	47.49	62.41
GSMUA_Achr10P...	Banana	cytosol	46.1	61.29
TraesCS4A01G201200.1	Wheat	cytosol	45.58	61.02
TraesCS4D01G102200.1	Wheat	cytosol	45.41	60.79
VIT_19s0090g01000.t01	Wine grape	cytosol	47.49	60.62
TraesCS4B01G105300.2	Wheat	cytosol	45.23	60.56
Os12t0190000-01	Rice	cytosol	45.75	60.27
HORVU4Hr1G017030.1	Barley	cytosol	44.54	59.63
EES16792	Sorghum	cytosol	44.54	59.08
TraesCS5A01G107800.2	Wheat	cytosol	44.02	59.07
GSMUA_Achr6P12830_001	Banana	cytosol	44.37	58.85
TraesCS5D01G122900.1	Wheat	cytosol	43.85	58.84
TraesCS5B01G111700.2	Wheat	cytosol	43.67	58.6
HORVU5Hr1G031870.1	Barley	cytosol	42.81	57.18
GSMUA_Achr6P07340_001	Banana	cytosol	41.42	55.84
Zm00001d035337_P001	Maize	cytosol	43.67	54.31
GSMUA_Achr6P17590_001	Banana	cytosol	17.16	47.14

Protein Annotations

EnsemblPlants:CDY20787	EnsemblPlantsGene:GSBRNA2T00013022001	GO:A0A078G701	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	InterPro:Stig1	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	PFAM:PF04885
PFAM:PF16269	ProteinID:CDY20787	ProteinID:CDY20787.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0004EE3221	UniProt:A0A078G701	MapMan:10.3.1.5	MapMan:11.10.2.2.1	:	:

Description

BnaA02g09270DBnaA02g09270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G701]

Coordinates

chrLK032111:-:598319..604484

Molecular Weight (calculated)

64587.4 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.238

Length

577 amino acids

Sequence
(BLAST)

001: MAQFMKLLVT IALTMAITVA IITTRTNTTT TTFALEDPLK DHTPPGAVKV RPSRFLAEKV DNGQGPKARN PNAADHCNKD PEICSSSYYS TGANSTLACC
101: NNKCMDLSTD DKNCGACKNK CKFGQTCCRG QCVYVAYDKR HCGECNHRCE LGELCVYGLF NLERAIGFFL LRMLLKIKRV PAVVSNHQKD ETAEEEGEEC
201: GRKCCINGER LPLYTCKHLE KPAEENVTFL ESLLLGEWED RFQRGLFRYD VTACETKVIP GKYGFIAQLN EGRHLQKRPT EFRVDQVLQP FDVNKFNFTK
301: VSQEELLFQF EAGMPLDVDN SPSVVAINVS PIEYGHVLLI PRILDCLPQR IDHKSLLLAL HMAVEAANPY FRVGYNSLGA FATINHLHFQ AYYLAMPFPI
401: EKAHSLKITT TNDGVRISKL TSYPVRGLLF EGGNSIKELS DVVSNASVCL QNNNISFNIL ISDSGKRIFL LPQCYAEKQA LGGVSSELLD TQVNPAVWEM
501: SGHMVLKRKE DYERATEEKA WSLLAEVSLS EERLKEVITM IFEATGCNGE EEEQSSIDGS FVRVQCFHSV KEEAVSN

Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)

001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N

Arabidopsis Description

VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.