Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G111100.2 | |
| TraesCS3B01G129800.4 | |
| TraesCS3D01G113100.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G122900.1 | Wheat | cytosol | 97.91 | 97.91 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 96.98 | 96.98 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 90.0 | 89.58 |
| Os12t0190000-01 | Rice | cytosol | 85.12 | 83.56 |
| CDY06609 | Canola | cytosol | 13.95 | 76.92 |
| EES16792 | Sorghum | cytosol | 77.67 | 76.78 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 76.28 | 76.1 |
| Zm00001d035337_P001 | Maize | cytosol | 78.84 | 73.06 |
| GSMUA_Achr10P... | Banana | cytosol | 71.63 | 70.97 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 69.07 | 68.28 |
| KRH46222 | Soybean | cytosol | 63.02 | 67.75 |
| KRG98713 | Soybean | cytosol | 66.05 | 65.29 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 64.19 | 64.49 |
| PGSC0003DMT400069484 | Potato | cytosol | 65.58 | 64.38 |
| VIT_14s0006g01370.t01 | Wine grape | cytosol | 64.65 | 64.2 |
| KRH14364 | Soybean | cytosol | 64.88 | 63.99 |
| Solyc06g073320.2.1 | Tomato | cytosol | 64.88 | 63.84 |
| KRH73776 | Soybean | cytosol | 64.65 | 63.33 |
| CDY46677 | Canola | cytosol | 58.37 | 63.07 |
| Bra019082.1-P | Field mustard | cytosol | 57.91 | 63.04 |
| CDX97369 | Canola | cytosol | 63.26 | 62.96 |
| PGSC0003DMT400078783 | Potato | cytosol | 63.95 | 62.79 |
| AT5G55120.1 | Thale cress | cytosol | 62.56 | 62.41 |
| CDX92792 | Canola | cytosol | 57.91 | 62.41 |
| CDY14296 | Canola | cytosol | 63.95 | 62.36 |
| CDY29254 | Canola | cytosol | 62.79 | 62.36 |
| Solyc02g091510.2.1 | Tomato | nucleus | 63.26 | 62.1 |
| CDX89298 | Canola | cytosol | 62.56 | 61.98 |
| Bra026398.1-P | Field mustard | cytosol | 62.56 | 61.98 |
| Bra010424.1-P | Field mustard | cytosol | 63.49 | 61.9 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 64.42 | 61.28 |
| AT4G26850.1 | Thale cress | cytosol | 62.09 | 60.41 |
| CDY06608 | Canola | cytosol | 23.02 | 53.8 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 26.05 | 53.33 |
| TraesCS3B01G426400.3 | Wheat | plastid | 45.12 | 48.87 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.6 | 43.67 |
| Bra035554.1-P | Field mustard | extracellular | 59.77 | 43.41 |
| TraesCS5B01G050200.1 | Wheat | cytosol | 24.65 | 28.73 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G111700.2 | EnsemblPlantsGene:TraesCS5B01G111700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0080048 |
| InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | MapMan:10.3.1.5 | : | : |
Description
No Description!
Coordinates
chr5B:+:167290746..167293667
Molecular Weight (calculated)
47781.1 Da
IEP (calculated)
5.074
GRAVY (calculated)
-0.050
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTIKRVPT VVSNYQEDAG ERPRGGCGRN CLGHCCLPVS ELPVYAFKAN PTKLPLQEDA VPTDFFINLL LGQWEDRMTQ GLFRYDVTAC ETKVIPGNLG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EVLFQFENSG SDDSYFLRSA AVTVADRAPN VVAINVSPIE YGHVLLIPRV LDHLPQRIDQ
201: ESFLLALHMA AEAASPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEKGYTLNDL ANVVSSACIW
301: LQDNNVPYNV LISDSGRKIF LFPQCYAEKQ ALGDVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAVVSL SEARFEEVKA YIFDAACLVQ
401: SQVEEEIDDA IYAPVPVGPS AVGEGCLVIP
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDSA KFNFTKVGQE EVLFQFENSG SDDSYFLRSA AVTVADRAPN VVAINVSPIE YGHVLLIPRV LDHLPQRIDQ
201: ESFLLALHMA AEAASPYFRL GYNSLGAFAT INHLHFQAYY LTVPFPVEKA ATQRIPLAEG GIKSGVKVSK LMNYPVRGLV FEKGYTLNDL ANVVSSACIW
301: LQDNNVPYNV LISDSGRKIF LFPQCYAEKQ ALGDVSQELL DTQVNPAVWE ISGHIVLKRR DDYEEASEAS AWRLLAVVSL SEARFEEVKA YIFDAACLVQ
401: SQVEEEIDDA IYAPVPVGPS AVGEGCLVIP
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.