Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G111100.2 | Wheat | cytosol | 92.75 | 94.16 |
| TraesCS3B01G129800.4 | Wheat | cytosol | 91.25 | 93.11 |
| Os01t0186200-01 | Rice | cytosol | 81.75 | 82.78 |
| KXG31655 | Sorghum | cytosol | 77.0 | 77.0 |
| Zm00001d039530_P001 | Maize | cytosol | 75.0 | 74.63 |
| HORVU3Hr1G020100.9 | Barley | mitochondrion | 83.0 | 69.31 |
| GSMUA_Achr5P06380_001 | Banana | nucleus | 56.0 | 57.29 |
| KRH74769 | Soybean | cytosol | 45.75 | 47.16 |
| CDY03044 | Canola | nucleus | 45.75 | 46.92 |
| VIT_01s0026g01590.t01 | Wine grape | nucleus | 46.25 | 46.6 |
| CDY45203 | Canola | cytosol, nucleus, plastid | 45.5 | 46.55 |
| Bra024812.1-P | Field mustard | cytosol, nucleus, plastid | 45.25 | 46.29 |
| AT2G02710.1 | Thale cress | nucleus | 45.75 | 45.86 |
| KRH69365 | Soybean | cytosol | 45.0 | 45.57 |
| KRH58039 | Soybean | cytosol | 23.5 | 45.41 |
| PGSC0003DMT400045475 | Potato | nucleus | 44.0 | 44.22 |
| Solyc05g007020.2.1 | Tomato | nucleus | 44.0 | 44.22 |
| Solyc01g010480.2.1 | Tomato | cytosol | 41.75 | 43.38 |
| PGSC0003DMT400068851 | Potato | nucleus | 41.0 | 42.49 |
| KRH07406 | Soybean | cytosol | 18.75 | 27.88 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G113100.2 | EnsemblPlantsGene:TraesCS3D01G113100 | Gene3D:3.30.450.20 | InterPro:IPR000014 | InterPro:PAC | InterPro:PAS |
| InterPro:PAS-like_dom_sf | PANTHER:PTHR45497 | PFAM:PF13426 | PFscan:PS50112 | SEG:seg | SMART:SM00086 |
| SUPFAM:SSF55785 | TIGR:cd00130 | TIGRFAMs:TIGR00229 | MapMan:26.1.2.4.1 | : | : |
Description
No Description!
Coordinates
chr3D:+:67061553..67065471
Molecular Weight (calculated)
43929.5 Da
IEP (calculated)
7.386
GRAVY (calculated)
-0.163
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEERRLAA SLTARYSEWV LEELDELRGS FLLTDPAMPG HPIVYASRGL AALTGYPRRE LLGRNARLFQ GAATDRAAVS GVREAVRAQR AHQVAILNYR
101: RDGSPHWVLL HLAPVFHAAD GRVLHFLAVQ VPIAPASPPR RHPGRPAPLA ACREEARGEE ELPCASHVGE VFVDIDKRGL EAEELRIASG CDKEMALSTA
201: NNIFSTLNRY SKLTGLVVCE RRCDSVGIPA LSSSLNLSLG RIKQSFVLTD RHLPDMPIVY ASDAFLSLTG KDFCCSNHLT YPGYSREEIL GCNCRFLNGP
301: GTSAEVLEEI NQHICREEAC TVHLLNYRKD GSTFRDLLHV SPIRNSSGKV AFHVWVHLDE SAKHDFSGLT PEVWQLGAVG AVRVAVRSLS ASGSLLRPSQ
101: RDGSPHWVLL HLAPVFHAAD GRVLHFLAVQ VPIAPASPPR RHPGRPAPLA ACREEARGEE ELPCASHVGE VFVDIDKRGL EAEELRIASG CDKEMALSTA
201: NNIFSTLNRY SKLTGLVVCE RRCDSVGIPA LSSSLNLSLG RIKQSFVLTD RHLPDMPIVY ASDAFLSLTG KDFCCSNHLT YPGYSREEIL GCNCRFLNGP
301: GTSAEVLEEI NQHICREEAC TVHLLNYRKD GSTFRDLLHV SPIRNSSGKV AFHVWVHLDE SAKHDFSGLT PEVWQLGAVG AVRVAVRSLS ASGSLLRPSQ
001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC
Arabidopsis Description
TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.