Factsheet for Solyc01g010480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	Solyc06g073320.2.1	AT4G26850.1	17982713
AT2G02710.1	Solyc06g073320.2.1	AT5G55120.1	17982713
AT2G02710.1	Solyc06g073320.2.1	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068851	Potato	nucleus	94.03	93.78
Solyc05g007020.2.1	Tomato	nucleus	67.53	65.33
VIT_01s0026g01590.t01	Wine grape	nucleus	58.7	56.93
KRH74769	Soybean	cytosol	54.55	54.12
KRH69365	Soybean	cytosol	54.55	53.16
CDY03044	Canola	nucleus	53.25	52.56
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	52.99	52.17
CDY45203	Canola	cytosol, nucleus, plastid	52.73	51.92
AT2G02710.1	Thale cress	nucleus	53.77	51.88
KRH58039	Soybean	cytosol	26.75	49.76
GSMUA_Achr5P06380_001	Banana	nucleus	50.13	49.36
Os01t0186200-01	Rice	cytosol	45.45	44.3
TraesCS3B01G129800.4	Wheat	cytosol	43.38	42.6
TraesCS3A01G111100.2	Wheat	cytosol	43.38	42.39
KXG31655	Sorghum	cytosol	43.38	41.75
TraesCS3D01G113100.2	Wheat	cytosol	43.38	41.75
Zm00001d039530_P001	Maize	cytosol	41.56	39.8
KRH07406	Soybean	cytosol	22.86	32.71
HORVU3Hr1G020100.9	Barley	mitochondrion	39.74	31.94

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	InterPro:IPR000014	InterPro:IPR000700	UniProt:K4ATP3
InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112
PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086	SUPFAM:SSF55785	EnsemblPlantsGene:Solyc01g010480.2	EnsemblPlants:Solyc01g010480.2.1
TIGRFAMs:TIGR00229	UniParc:UPI0002761AFF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:5365583..5369039

Molecular Weight (calculated)

42970.4 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.319

Length

385 amino acids

Sequence
(BLAST)

001: MESQRGSMIE HSFDCYSAGF QESLDELPDC FTITDPYISG NPIVYASRGF LEMFGYSKYE VIGRNGRIFQ GPKTDRRSVL EVREAIREER DIQISLLNYR
101: KDGTPFWMLF HMCPVFDEKD GRVIHFLGVQ VPILRRPKPS GVGLNLCQDV AGCRESVLRC YRREVHSMSV ERALSLASGS GLDFTGIDVE GPCDANDLEK
201: RKATAVINNI LTVLVHDGES TGRLVRGKRH SQPGTGLLGA SLNISLGRIK QSFVLTDANL PDMPIVFASD NFLKLTGLSK NEVLGYNCRS FSEKETDSSS
301: QFRIKECIQN EQPCTLRMLN YRKDGTSFRL HISPVRNASG KVAYFVAVEG EDNNETKENQ GLRQRGVVAA VKVAVRGLSM SVRTC

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.