Factsheet for Solyc05g007020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	Solyc06g073320.2.1	AT4G26850.1	17982713
AT2G02710.1	Solyc06g073320.2.1	AT5G55120.1	17982713
AT2G02710.1	Solyc06g073320.2.1	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045475	Potato	nucleus	96.73	96.73
Solyc01g010480.2.1	Tomato	cytosol	65.33	67.53
VIT_01s0026g01590.t01	Wine grape	nucleus	63.57	63.73
KRH74769	Soybean	cytosol	56.78	58.25
KRH69365	Soybean	cytosol	57.04	57.47
CDY03044	Canola	nucleus	55.53	56.67
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	55.03	56.01
CDY45203	Canola	cytosol, nucleus, plastid	55.03	56.01
AT2G02710.1	Thale cress	nucleus	54.52	54.39
GSMUA_Achr5P06380_001	Banana	nucleus	52.26	53.2
KRH58039	Soybean	cytosol	26.63	51.21
Os01t0186200-01	Rice	cytosol	46.73	47.09
TraesCS3B01G129800.4	Wheat	cytosol	44.22	44.9
TraesCS3A01G111100.2	Wheat	cytosol	43.97	44.42
KXG31655	Sorghum	cytosol	44.22	44.0
TraesCS3D01G113100.2	Wheat	cytosol	44.22	44.0
Zm00001d039530_P001	Maize	cytosol	42.46	42.04
HORVU3Hr1G020100.9	Barley	mitochondrion	41.46	34.45
KRH07406	Soybean	cytosol	22.36	33.09

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	EMBL:AB576162	UniProt:E3WH16	GO:GO:0000155	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	InterPro:IPR000014
InterPro:IPR000700	InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426
PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785
EnsemblPlantsGene:Solyc05g007020.2	EnsemblPlants:Solyc05g007020.2.1	TIGRFAMs:TIGR00229	UniParc:UPI0001F1F7D5	SEG:seg	:

Description

LOV/LOV protein [Source:UniProtKB/TrEMBL;Acc:E3WH16]

Coordinates

chr5:-:1607827..1612548

Molecular Weight (calculated)

44386.2 Da

IEP (calculated)

8.526

GRAVY (calculated)

-0.275

Length

398 amino acids

Sequence
(BLAST)

001: MESQLGLIEK SFNVKYSDGV REALDELPDS FTITDPSISG HPIVYVSRGF LKVFGYSKNE VLGKNGRVFQ GPKTNRRSVM AIREAIREER GIQISLLNYR
101: KDGTPFWMLF NMCPVYSEKD GRVVHFLGIQ VPILRRRNSL GGGIGRNGGV CYDGGNCRGY VYKCCRREVC SNSMMEMDRA LSVDSVSGLD HTEVDVEGPC
201: EASDQEKTKA SVAVNNIMSV LANYSELNGR LVIDRRCCQS GTSLLSASLN ISFGRIKQSF VLTDAHLPDM PIVYASDAFL KLIGYLRHEV LGRNCRFLSG
301: EDTERGTQFQ IKQCIQNEQP CTVHILNYRK DGTSFWNFLH ISPIRSASGK VAYFVGIQIE DTTEAREKQG LNPEMRHRSV VAAVKVAVRG WSMGASTS

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.