Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d035337_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02710.1 | Zm00001d035337_P001 | AT4G26850.1 | 17982713 |
| AT2G02710.1 | Zm00001d035337_P001 | AT5G55120.1 | 17982713 |
| AT2G02710.1 | Zm00001d035337_P001 | AT5G55120.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31655 | Sorghum | cytosol | 89.3 | 89.75 |
| Os01t0186200-01 | Rice | cytosol | 75.87 | 77.22 |
| TraesCS3A01G111100.2 | Wheat | cytosol | 73.63 | 75.13 |
| TraesCS3D01G113100.2 | Wheat | cytosol | 74.63 | 75.0 |
| TraesCS3B01G129800.4 | Wheat | cytosol | 72.89 | 74.74 |
| HORVU3Hr1G020100.9 | Barley | mitochondrion | 67.66 | 56.78 |
| GSMUA_Achr5P06380_001 | Banana | nucleus | 53.23 | 54.73 |
| KRH74769 | Soybean | cytosol | 43.53 | 45.1 |
| VIT_01s0026g01590.t01 | Wine grape | nucleus | 43.28 | 43.83 |
| KRH69365 | Soybean | cytosol | 43.03 | 43.8 |
| CDY03044 | Canola | nucleus | 42.29 | 43.59 |
| KRH58039 | Soybean | cytosol | 22.14 | 43.0 |
| AT2G02710.1 | Thale cress | nucleus | 42.54 | 42.86 |
| PGSC0003DMT400045475 | Potato | nucleus | 42.29 | 42.71 |
| Solyc05g007020.2.1 | Tomato | nucleus | 42.04 | 42.46 |
| CDY45203 | Canola | cytosol, nucleus, plastid | 41.04 | 42.2 |
| Bra024812.1-P | Field mustard | cytosol, nucleus, plastid | 40.8 | 41.94 |
| Solyc01g010480.2.1 | Tomato | cytosol | 39.8 | 41.56 |
| PGSC0003DMT400068851 | Potato | nucleus | 39.3 | 40.93 |
| KRH07406 | Soybean | cytosol | 16.92 | 25.28 |
Protein Annotations
| EMBL:BT041078 | EnsemblPlants:Zm00001d039530_P001 | EnsemblPlants:Zm00001d039530_T001 | EnsemblPlantsGene:Zm00001d039530 | Gene3D:3.30.450.20 | InterPro:IPR000014 |
| InterPro:PAC | InterPro:PAS | InterPro:PAS-like_dom_sf | PANTHER:PTHR45497 | PFAM:PF13426 | PFscan:PS50112 |
| ProteinID:ONM29066.1 | SEG:seg | SMART:SM00086 | SUPFAM:SSF55785 | TIGRFAMs:TIGR00229 | UniParc:UPI00017B77FB |
| UniProt:B4FVE0 | MapMan:26.1.2.4.1 | : | : | : | : |
Description
Protein TWIN LOV 1
Coordinates
chr3:+:7377640..7381732
Molecular Weight (calculated)
43011.3 Da
IEP (calculated)
7.835
GRAVY (calculated)
-0.060
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGAGDHG QGQGQGHGRF ASSLTARYSD WVLETLDELP GSFLLTDPAL PGHPIVYASR GLAALTGYAP RDVLGRNARL FQGAATDRAT VAGVREAVRA
101: HRPHQAAILN YRRDGAPHWV LLHLAPLFHA RDGTLLHFLA VQVPIAPAAV ARGATCHTTG HLLAACRDEA SRVAEDFPCA THAGKVFVDM DKRGLETEEP
201: RVPSDSEKDM AISTANSIVS ALNSYSKLTG LVVSRKRCDS IGIPALSSSL KLSLGRIKQS FVLTDSRLPN MPIIYASDAF TSLTGYSREE ILGCNCKVLN
301: GPGTSLEVLE EINQHICSEQ ACTVDLLSYR KDGSSFCDHL HVSPIRDASG KVAFHIWVHL DMGAKHDFSG LTPEKWLLGA VGAVRVAVRG LSASGSLLRP
401: SQ
101: HRPHQAAILN YRRDGAPHWV LLHLAPLFHA RDGTLLHFLA VQVPIAPAAV ARGATCHTTG HLLAACRDEA SRVAEDFPCA THAGKVFVDM DKRGLETEEP
201: RVPSDSEKDM AISTANSIVS ALNSYSKLTG LVVSRKRCDS IGIPALSSSL KLSLGRIKQS FVLTDSRLPN MPIIYASDAF TSLTGYSREE ILGCNCKVLN
301: GPGTSLEVLE EINQHICSEQ ACTVDLLSYR KDGSSFCDHL HVSPIRDASG KVAFHIWVHL DMGAKHDFSG LTPEKWLLGA VGAVRVAVRG LSASGSLLRP
401: SQ
001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC
Arabidopsis Description
TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.