CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98713
KRH14364
KRH46222
KRH73776

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	KRG98713	AT4G26850.1	17982713
AT2G02710.1	KRH14364	AT4G26850.1	17982713
AT2G02710.1	KRH46222	AT4G26850.1	17982713
AT2G02710.1	KRH73776	AT4G26850.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	17982713
AT2G02710.1	KRH14364	AT5G55120.1	17982713
AT2G02710.1	KRH46222	AT5G55120.1	17982713
AT2G02710.1	KRH73776	AT5G55120.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	21798944
AT2G02710.1	KRH14364	AT5G55120.1	21798944
AT2G02710.1	KRH46222	AT5G55120.1	21798944
AT2G02710.1	KRH73776	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74769	Soybean	cytosol	89.62	91.24
KRH58039	Soybean	cytosol	39.49	75.36
VIT_01s0026g01590.t01	Wine grape	nucleus	60.76	60.45
CDY03044	Canola	nucleus	57.22	57.95
PGSC0003DMT400045475	Potato	nucleus	57.97	57.54
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	56.71	57.29
Solyc05g007020.2.1	Tomato	nucleus	57.47	57.04
CDY45203	Canola	cytosol, nucleus, plastid	56.46	57.03
AT2G02710.1	Thale cress	nucleus	56.46	55.89
KRH07406	Soybean	cytosol	37.72	55.39
GSMUA_Achr5P06380_001	Banana	nucleus	54.43	54.99
PGSC0003DMT400068851	Potato	nucleus	53.67	54.92
Solyc01g010480.2.1	Tomato	cytosol	53.16	54.55
TraesCS3A01G111100.2	Wheat	cytosol	47.09	47.21
TraesCS3B01G129800.4	Wheat	cytosol	46.84	47.19
Os01t0186200-01	Rice	cytosol	47.09	47.09
TraesCS3D01G113100.2	Wheat	cytosol	45.57	45.0
Zm00001d039530_P001	Maize	cytosol	43.8	43.03
KXG31655	Sorghum	cytosol	43.54	43.0
HORVU3Hr1G020100.9	Barley	mitochondrion	43.54	35.91

Protein Annotations

EntrezGene:100799855	MapMan:26.1.2.4.1	Gene3D:3.30.450.20	UniProt:A0A0R0KYL2	EMBL:ACUP02000702	EnsemblPlantsGene:GLYMA_02G022000
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014
GO:GO:0038023	InterPro:IPR000014	InterPro:IPR000700	EnsemblPlants:KRH69365	ProteinID:KRH69365	ProteinID:KRH69365.1
InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112
PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229
UniParc:UPI0003DE9540	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:1955799..1959903

Molecular Weight (calculated)

43877.3 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.216

Length

395 amino acids

Sequence
(BLAST)

001: MPMELEQELG STTIQRSFDA RYTRHARDSL GELPDSFTIT DPSIPGHPIV FASPGFLKLT GYSLREVLGR PAAIFQGPRT SRKSVIEIRE AVREERNAQV
101: VLLNYRRDGT PFWMLFRVSP VFSSDGGAVV HFVAVQVPLQ KKEGSGVRDF GFGCCRKEVC VDSLAEIDRV CSLEQVLEPD VRALWDAEVE REEPCEASDD
201: EKRSAVTAMD SIFSVLTHYS EATGRLVCRK RSSIPDVGLL STSLIISLGR IKQSFVLTNP HLPDMPIVYA SDAFLKLTGY AKNEVLGHNC RFLGGTDTDT
301: STLHLIRESI KTEQPCTVRI LNYRKDKSSF WNFLHISPVR DASGKVAYFV GVQIEDNNKN DDSHCLSPEK RQLSVVGVVK VAVRSLSMTA GSSES

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.