CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89298
CDX92792
CDX97369
CDY06608
CDY06609
CDY14296
CDY20787
CDY29254
CDY46677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	CDX89298	AT4G26850.1	17982713
AT2G02710.1	CDX92792	AT4G26850.1	17982713
AT2G02710.1	CDX97369	AT4G26850.1	17982713
AT2G02710.1	CDY14296	AT4G26850.1	17982713
AT2G02710.1	CDY29254	AT4G26850.1	17982713
AT2G02710.1	CDY46677	AT4G26850.1	17982713
AT2G02710.1	CDY06608	AT5G55120.1	17982713
AT2G02710.1	CDY06609	AT5G55120.1	17982713
AT2G02710.1	CDY20787	AT5G55120.1	17982713
AT2G02710.1	CDY06608	AT5G55120.1	21798944
AT2G02710.1	CDY06609	AT5G55120.1	21798944
AT2G02710.1	CDY20787	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45203	Canola	cytosol, nucleus, plastid	96.92	96.68
AT2G02710.1	Thale cress	nucleus	82.05	80.2
VIT_01s0026g01590.t01	Wine grape	nucleus	61.54	60.45
KRH74769	Soybean	cytosol	58.46	58.76
KRH69365	Soybean	cytosol	57.95	57.22
PGSC0003DMT400045475	Potato	nucleus	56.92	55.78
Solyc05g007020.2.1	Tomato	nucleus	56.67	55.53
GSMUA_Achr5P06380_001	Banana	nucleus	54.87	54.73
PGSC0003DMT400068851	Potato	nucleus	53.59	54.15
Solyc01g010480.2.1	Tomato	cytosol	52.56	53.25
KRH58039	Soybean	cytosol	27.44	51.69
Os01t0186200-01	Rice	cytosol	49.23	48.61
TraesCS3B01G129800.4	Wheat	cytosol	47.44	47.19
TraesCS3A01G111100.2	Wheat	cytosol	47.44	46.95
TraesCS3D01G113100.2	Wheat	cytosol	46.92	45.75
KXG31655	Sorghum	cytosol	44.36	43.25
Zm00001d039530_P001	Maize	cytosol	43.59	42.29
KRH07406	Soybean	cytosol	25.9	37.55
HORVU3Hr1G020100.9	Barley	mitochondrion	44.62	36.33

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	GO:A0A078EQV7	EnsemblPlants:CDY03044	ProteinID:CDY03044	ProteinID:CDY03044.1
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00115376001	InterPro:IPR000014	InterPro:IPR000700
InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112
PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229
UniParc:UPI0004EDE0A7	SEG:seg	:	:	:	:

Description

BnaC07g21830D

Coordinates

chrLK031939:+:564467..566674

Molecular Weight (calculated)

43583.3 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.189

Length

390 amino acids

Sequence
(BLAST)

001: MSITQSSASL FSTTEEKEGT FNARYSLWIK EALDELPHSF TITDPFISGH PIVFASPGFL KMTGYSREEV IGRNGRAFQG PKTNRRSIME IREAIREERP
101: VQVSILNYRK SGSPFWMLFH MIPVFGNDDG RVIHFVAVQV PISGQKMRNG SGCSEMVFGS CRREVCLGSF VHQERALPVE CDEQELENWE HCEASESEKL
201: KSAEAVGSVL SVLTRYSEFA GRLVCGKRNC LRGADCLSSS LVISLGRIKQ SFVLTNPCLP DMPIVYASDA FLTLTGYKRH EVLGQNCRFL SGVDTDSSVL
301: YEMKECILKG QPCTVQILNY SNRKDKSTFW NLLHISPVRN ASGKTAYFVG VQMEASCKDI ESKELRPETR QLSVVGAVRV AVRSSFMATC

Best Arabidopsis Sequence Match ( AT2G02710.1 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.