Factsheet for Os01t0186200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os12t0190000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	Os12t0190000-01	AT4G26850.1	17982713
AT2G02710.1	Os12t0190000-01	AT5G55120.1	17982713
AT2G02710.1	Os12t0190000-01	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G129800.4	Wheat	cytosol	82.28	82.91
TraesCS3A01G111100.2	Wheat	cytosol	82.28	82.49
TraesCS3D01G113100.2	Wheat	cytosol	82.78	81.75
KXG31655	Sorghum	cytosol	77.22	76.25
Zm00001d039530_P001	Maize	cytosol	77.22	75.87
HORVU3Hr1G020100.9	Barley	mitochondrion	75.44	62.21
GSMUA_Achr5P06380_001	Banana	nucleus	58.23	58.82
VIT_01s0026g01590.t01	Wine grape	nucleus	49.62	49.37
CDY03044	Canola	nucleus	48.61	49.23
CDY45203	Canola	cytosol, nucleus, plastid	47.85	48.34
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	47.59	48.08
KRH74769	Soybean	cytosol	46.58	47.42
AT2G02710.1	Thale cress	nucleus	47.85	47.37
KRH69365	Soybean	cytosol	47.09	47.09
PGSC0003DMT400045475	Potato	nucleus	47.09	46.73
Solyc05g007020.2.1	Tomato	nucleus	47.09	46.73
KRH58039	Soybean	cytosol	24.05	45.89
Solyc01g010480.2.1	Tomato	cytosol	44.3	45.45
PGSC0003DMT400068851	Potato	nucleus	43.29	44.3
KRH07406	Soybean	cytosol	19.24	28.25

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	EntrezGene:4325659	EMBL:AK109372	ProteinID:BAD67803.1	ProteinID:BAF04158.1
ProteinID:BAS70782.1	ProteinID:EEE54014.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000014	EnsemblPlantsGene:Os01g0186200	EnsemblPlants:Os01t0186200-01
InterPro:PAC	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR45497
UniProt:Q5VRX2	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0000457CAA
RefSeq:XP_015622470.1	SEG:seg	:	:	:	:

Description

Similar to Phototropin. (Os01t0186200-01);Hypothetical conserved gene. (Os01t0186200-02)

Coordinates

chr1:-:4581254..4584592

Molecular Weight (calculated)

43077.3 Da

IEP (calculated)

7.354

GRAVY (calculated)

-0.136

Length

395 amino acids

Sequence
(BLAST)

001: MEGAEAEERR LAASLTARYS DWVVEALDEL PGSFILTDPA MPGHPIVYAS RGLASLTGYP PREVLGRNAR LFQGADTDRA AVAGVREAVR GQRPHQVSIL
101: NYRRDGEAHW VLLHLAPVFH ASDGRVLHFL AVQVPIAPPA SRRRTPPCRA ARPFVVFAAC REEARVEEEC PCASHAGEVF VDVDKRGQDA EEPRVASEHE
201: KEKALSTANS IFSALNRYSK LTGLVVCGKR CDSVGIPALS SSLNLSLGRI KQSFVLTDPH LPDMPIIYAS DAFLSLTGYS REEILGCNCR FLNGPGTSVE
301: VLEQINQHIC SEQACTVHLL NYRKGGSSFR DLLHISPIRN ASGKVAFHVW VHLDEGAKYD FNGLTPEVWQ LGAVGAVRVA VRSLSASGSL LRPSQ

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.