Factsheet for Bra024812.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010424.1-P
Bra019082.1-P
Bra026398.1-P
Bra035554.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	Bra010424.1-P	AT4G26850.1	17982713
AT2G02710.1	Bra019082.1-P	AT4G26850.1	17982713
AT2G02710.1	Bra026398.1-P	AT4G26850.1	17982713
AT2G02710.1	Bra035554.1-P	AT5G55120.1	17982713
AT2G02710.1	Bra035554.1-P	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45203	Canola	cytosol, nucleus, plastid	97.95	97.95
AT2G02710.1	Thale cress	nucleus	82.1	80.45
VIT_01s0026g01590.t01	Wine grape	nucleus	60.36	59.45
KRH74769	Soybean	cytosol	57.8	58.25
KRH69365	Soybean	cytosol	57.29	56.71
PGSC0003DMT400045475	Potato	nucleus	56.27	55.28
Solyc05g007020.2.1	Tomato	nucleus	56.01	55.03
GSMUA_Achr5P06380_001	Banana	nucleus	54.48	54.48
PGSC0003DMT400068851	Potato	nucleus	53.2	53.89
Solyc01g010480.2.1	Tomato	cytosol	52.17	52.99
KRH58039	Soybean	cytosol	27.88	52.66
Os01t0186200-01	Rice	cytosol	48.08	47.59
TraesCS3B01G129800.4	Wheat	cytosol	46.55	46.43
TraesCS3A01G111100.2	Wheat	cytosol	46.29	45.94
TraesCS3D01G113100.2	Wheat	cytosol	46.29	45.25
KXG31655	Sorghum	cytosol	43.22	42.25
Zm00001d039530_P001	Maize	cytosol	41.94	40.8
KRH07406	Soybean	cytosol	26.09	37.92
HORVU3Hr1G020100.9	Barley	mitochondrion	44.25	36.12

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	EnsemblPlantsGene:Bra024812	EnsemblPlants:Bra024812.1	EnsemblPlants:Bra024812.1-P	GO:GO:0000155
GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
InterPro:IPR000014	InterPro:IPR000700	UniProt:M4E7Q6	InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C
InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086
SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI000253F8C7	SEG:seg	:

Description

AT2G02710 (E=4e-107) PLP, PLPB | PLPB (PAS/LOV PROTEIN B); signal transducer/ two-component sensor

Coordinates

chrA06:+:23572615..23574499

Molecular Weight (calculated)

43739.7 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.161

Length

391 amino acids

Sequence
(BLAST)

001: MSITQSSASL FTTATEEKEG AFSARYSLWI KEALDELPHS FTITDPFISG HPIVFASPGF LKMTGYSREE VIGRNGRAFQ GPKTNRRSIM EIREAIREER
101: PVQVSILNYR KSGSPFWMLF HMIPVFGNDD GRVIHFVAVQ VPISGRKMRN GSGCSEMVFG SCRREVCLGS YVHQERALPV ECDEQELENW EHCEASESEK
201: LKSVEAVGNV LSVLTRYSEF AGRLVCGKRS CLRVADCLSS SLVISLGRIK QSFVLTNPCL PDMPVVYASD AFLTLTGYKR HEVLGQNCRF LSGVDTDSSV
301: LYEMKECILK GKPCTVQILN YSNRKDKSTF WNLLHISPVR NASGKTAYFV GVQMEASCKD IESKELRPET RQLSVVGAVR VAVRSSFMVT C

Best Arabidopsis Sequence Match ( AT2G02710.1 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.